RegulonDB RegulonDB 10.8:Coexpression
   


Gene Coexpression in Escherichia coli K-12 genome


 

This section aims to give an overview of different features that are known about the query genes, such as their transcriptional regulation, their gene product, the operon to which they belong and the description of gene ontologies they are associated to. In the case one or more of the input genes are not found in our database, they will appear under the section "gene (s) not found". The table can be sorted by any of the features by clicking icon attached to the name of the feature´s associated column.

Query size: 61 gene(s)


  Gene name Product Operon Gene regulation GOs list
  cho endonuclease of nucleotide excision repair cho LexA view
  ddlB D-alanine-D-alanine ligase B mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC LexA , MraZ , PdhR view
  dinB DNA polymerase IV (Y-family DNA polymerase; translesion DNA synthesis) dinB-yafNOP LexA view
  dinD DNA-damage-inducible protein dinD LexA view
  dinF putative transport protein, multi antimicrobial extrusion (MATE) family lexA-dinF LexA view
  dinG ATP-dependent helicase dinG LexA view
  dinI DNA damage-inducible protein I dinI LexA , NagC view
  dinJ DinJ antitoxin of YafQ-DinJ toxin-antitoxin system / DNA-binding transcriptional repressor dinJ-yafQ LexA view
  dinQ toxic inner membrane peptide DinQ dinQ LexA view
  dnaG DNA primase rpsU-dnaG-rpoD LexA view
  ftsA essential cell division protein FtsA mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC LexA , MraZ , PdhR , RcsB , SdiA view
  ftsI essential cell division protein FtsI; penicillin-binding protein 3 mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC LexA , MraZ , PdhR view
  ftsK essential cell division protein FtsK ftsK LexA view
  ftsL essential cell division protein FtsL mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC LexA , MraZ , PdhR view
  ftsQ essential cell division protein FtsQ mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC LexA , MraZ , PdhR , SdiA view
  ftsW essential cell division protein FtsW; lipid II flippase mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC LexA , MraZ , PdhR view
  ftsZ essential cell division protein FtsZ mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC LexA , MraZ , PdhR , RcsB , SdiA view
  hokE HokE hokE LexA view
  insK IS150 conserved protein InsB insK LexA view
  lexA LexA DNA-binding transcriptional repressor lexA-dinF LexA view
  lpxC UDP-3-O-acyl-N-acetylglucosamine deacetylase mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC LexA , MraZ , PdhR view
  mraY phospho-N-acetylmuramoyl-pentapeptide transferase mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC LexA , MraZ , PdhR view
  murC UDP-N-acetylmuramate-alanine ligase mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC LexA , MraZ , PdhR view
  murD UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC LexA , MraZ , PdhR view
  murE UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC LexA , MraZ , PdhR view
  murF D-alanyl-D-alanine-adding enzyme mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC LexA , MraZ , PdhR view
  murG N-acetylglucosaminyl transferase mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC LexA , MraZ , PdhR view
  phr deoxyribodipyrimidine photolyase (photoreactivation) ybgA-phr LexA view
  polB DNA polymerase II polB LexA view
  ptrA protease III ptrA-recBD LexA view
  recA DNA strand exchange and recombination protein with protease and nuclease activity recAX LexA view
  recB RecB ptrA-recBD LexA view
  recD RecD ptrA-recBD LexA view
  recN protein used in recombination and DNA repair recN LexA view
  recQ ATP-dependent DNA helicase recQ nd view
  recX regulatory protein RecX; inhibitor of RecA recAX LexA view
  rpoD RNA polymerase, sigma 70 (sigma D) factor rpsU-dnaG-rpoD LexA view
  rpsU 30S ribosomal subunit protein S21 rpsU-dnaG-rpoD LexA view
  ruvA branch migration of Holliday structures; repair ruvAB LexA view
  ruvB branch migration of Holliday structures; repair helicase ruvAB LexA view
  sbmC DNA gyrase inhibitor sbmC CRP , LexA view
  ssb ssDNA-binding protein ssb ArcA , LexA view
  sulA SOS cell division inhibitor sulA LexA , RcdA view
  symE toxin-like protein of the SOS response symE LexA view
  tisB toxic peptide TisB tisB LexA view
  umuC SOS mutagenesis and repair umuDC LexA view
  umuD SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC umuDC LexA view
  uvrA excision nuclease subunit A uvrA ArcA , LexA view
  uvrB DNA repair; excision nuclease subunit B uvrB LexA view
  uvrC excinuclease ABC, subunit C; repair of UV damage to DNA uvrYC LexA view
  uvrD ssDNA translocase and dsDNA helicase - DNA helicase II uvrD LexA view
  uvrY UvrY transcriptional regulator uvrYC LexA view
  yafN antitoxin of the YafO-YafN toxin-antitoxin system dinB-yafNOP LexA view
  yafO ribosome-dependent mRNA interferase, toxin of the YafO-YafN toxin-antitoxin system dinB-yafNOP LexA view
  yafP predicted acyltransferase with acyl-CoA N-acyltransferase domain dinB-yafNOP LexA view
  yafQ toxin of the YafQ-DinJ toxin-antitoxin system dinJ-yafQ LexA view
  ybfE LexA-regulated protein ybfE LexA view
  ybiB nonspecific DNA binding protein ybiB nd view
  ydjM predicted inner membrane protein regulated by LexA ydjM LexA view
  yebG conserved protein regulated by LexA yebG LexA view
  molR_1 molybdate metabolism regulator (interrupted) molR_1 LexA nd
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