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SUMMARY: In the absence of stress, the sigma factor σ24 is complexed with RssA and RssB in the inner membrane, but under envelope stress, misfolded proteins and lipoproteins appear in the periplasm. The lipoproteins release RssB from the complex RssB-rseA-σ24, and then a proteolytic cascade starts when DegS, bound to unfolded proteins, partially degrades the RseA protein in the RseA-σ24 complex, producing the RseA-1-108 polypeptide that is cleaved by RseP, and the complex is released from the inner membrane. In the cytoplasm, HslUV or Lon can degrade RseA, releasing σ24, which can bind to core RNA polymerase to activate transcription of genes for maintaining cell envelope integrity. Another protease that also degrades RseA in the cytoplasm is ClpXP, but the protein SspB has to be bound to the RseA-1-108-RpoE complex. On the other hand, the rpoE gene, which forms part of the rpoE-rseAB operon, is induced by the TF CpxR, which is shown in the image as a submap in a gray box. |
Name: | Sigma24      Signal transduction |
Synonyms: | RpoE |
Gene name: | rpoE |
Sigmulon regulators: | |
Sigmulon Genes: |
![]() ahpF, apaG, apaH, bacA, bamA, bamB, bamC, bamD, bamE, bepA, bhsA, cca, clpX, degP, der, dnaE, dsbC, ecpR, essD, fabZ,
fadM, fkpA, ftnB, fusA, greA, gspA, gspB, hcp, hcr, hokE, hpf, ibaG, insK, lgoR, lhr, lon, lptA, lptB, lptD, lpxA, lpxB, lpxD, lpxP, lyxK, malQ, micA, micL, mscM, mzrA, narV, narW, pdxA, phoQ, plsB, prfB, psd, ptsN, rapZ, rclA, rclB, rclC, recJ, recR, rfaD, rnhB, rnlB, rpoD, rpoH, rpoN, rrrD, rseA, rseB, rseC, rseP, rsmA, rutR, rybB, rzpD, sbmA, sgbE, sgbH, sgbU, skp, surA, tufA, uspD, waaC, waaF, waaL, wza, wzb, wzc, yaiW, ybaB, ybfG, ydhI, ydhJ, ydhK, ydiV, yeaY, |
Transcribed promoters | ![]() |
---|
Promoter Name | TSS Position | Transcribed Gene(s) | Distance from TSS to gene |
Promoter Sequence |
Box (-10) |
Box (-35) |
Evidence Code(s) | Reference(s) | |
---|---|---|---|---|---|---|---|---|---|
ahpFp | 639002 | ahpF | 751 | tagatgtccttgattaacaccaaaattaaaccttttaaaaaccaggcattcaaaaacggcGaattcatcgaaatcaccgaa -35 -10 +1 |
TCAAA | AAACCT | [AIPP] [TIM] |
[1] | |
bacAp | 3204175 | bacA | 44 | aaagaaaataattaattttacagctgttaaaccaaacggttataacctggtcatacgcagTagttcggacaagcggtacat -35 -10 +1 |
TCATA | AAACCA | [AIPP] [TIM] |
[2] | |
bamAp | 197821 | bamA | 107 | ctgctgttccttgcgatcgaaaagatcaagggcggaccggtatccgagcgggttcaagacTtttgttatcgcattggctcg -35 -10 +1 |
TTCAA | GGGCGG | [HIPP] [TIM] |
[3] | |
bamAp2 | 197026 | bamA, skp, lpxD, fabZ, lpxA, lpxB, rnhB, dnaE | 902 | gcggaagcacaaattgcaccaggtacggaactaaaagccgtagatggtatcgaaacgcctGattgggatgccgtgcgtttg -35 -10 +1 |
TCGAA | GAACTA | [AIPP] [CV(RS-EPT-CBR)] [CV(TIM)] [RS-EPT-CBR] [TIM] |
[1] [4] |
|
bamBp | 2638975 | der, bamB | 323 | aaatacttatggtgcgctggcttctttggaacttgcgcagcaatttgttgacaaaaatgaActagagaaagctgccgccca -35 -10 +1 |
ACAAA | GAACTT | [AIPP] [TIM] |
[1] | |
bamCp | 2599014 | bamC | 149 | acgcgttattaatcagcgtctgatgccattacacaacaaactatttgtcgaacccaatccAatcccggtgaaatgggcatg -35 -10 +1 |
TCGAA | GCCATT | [HIPP] [TIM] |
[3] | |
bamDp | 2736006 | bamD | 140 | ctgatctaagcgttgaccgagttggttttcggacaccgttgcagtgagctgtactcgttgTgccatatatactgcttcttc -35 -10 +1 |
GCTGT | GGTTTT | [HIPP] [TIM] |
[3] | |
bamDp2 | 2735961 | bamD | 185 | ttttattcgcgaacgtgaataatccgggaacatttcggccaaagcctgatctaagcgttgAccgagttggttttcggacac -35 -10 +1 |
TCTAA | GAACAT | [AIPP] [TIM] |
[1] | |
bamEp | 2753486 | bamE | 119 | ggcgaatgcgaaagaactgcttgcagcgtaaacttttttcctgcttcacggtcagagtaaAcagcaaaacgccgtaagacc -35 -10 +1 |
TCAGA | AAACTT | [AIPP] [TIM] |
[2] [1] |
|
bepAp1 | 2616068 | bepA, yfgD | 26 | gccgttacactcaaaggcggcgcggtgggaacgatatttcacagtatcggtcaaatgactAtctccagaaatacaggatag -35 -10 +1 |
TCAAA | GAACGA | [AIPP] [TIM] |
[1] | |
bhsAp | 1169033 | bhsA | 40 | taaaaaatatcttgtatgtgatccagatcacatctatcatttagttatcgatcgttaagtAattgcttgcgacgtcattca |
[HTIM] | [5] | |||
clpXp | 457202 | clpX, lon | 224 | attctgaaagttaaagggcgcatgaatgaacttatggcgcttcatacgggtcaatcattaGaacagattgaacgtgatacc -35 -10 +1 |
GGTCA | GAACTT | [AIPP] [CV(RS-EPT-CBR)] [CV(TIM)] [RS-EPT-CBR] [TIM] |
[1] [4] |
|
cyaRp | 2167114 | cyaR | 0 | tggaaaattcttagaaaccgatcacatacagctgcatttattaaggttatcatccgtttcGctgaaaaacataacccataa -35 -10 +1 |
AAGGTTATCAT | CATACA | [AIPP] [CV(RS-EPT-CBR)] [CV(TIM)] [HTIM] [RS-EPT-CBR] [TIM] |
[6] [7] [8] [4] |
|
cyaRp | 2167114 | cyaR | 0 | tggaaaattcttagaaaccgatcacatacagctgcatttattaaggttatcatccgtttcGctgaaaaacataacccataa -35 -10 +1 |
TATCA | ATACAG | [AIPP] [CV(RS-EPT-CBR)] [CV(TIM)] [HTIM] [RS-EPT-CBR] [TIM] |
[6] [7] [8] [4] |
|
cyaRp | 2167114 | cyaR | 0 | tggaaaattcttagaaaccgatcacatacagctgcatttattaaggttatcatccgtttcGctgaaaaacataacccataa -35 -10 +1 |
TATCAT | ATCACA | [AIPP] [CV(RS-EPT-CBR)] [CV(TIM)] [HTIM] [RS-EPT-CBR] [TIM] |
[6] [7] [8] [4] |
|
degPp | 180845 | degP | 39 | tttaccttttgcagaaactttagttcggaacttcaggctataaaacgaatctgaagaacaCagcaattttgcgttatctgt -35 -10 +1 |
TCTGA | GAACTT | [HIPP] [TIM] |
[3] [9] [10] [11] [12] [1] [13] [14] |
|
dsbCp | 3038834 | dsbC | 12 | accgagcgtctgcggcaacttcatcaacagcatcacccgcgggcgtgatgtctgaaaagaAcgggaagatttatgaagaaa -35 -10 +1 |
TCTGA | CAGCAT | [HIPP] [TIM] |
[3] | |
dsbCp2 | 3039633 | prfB, recJ, dsbC | 811 | ggaaaaaaatctggctgaaaatacgttgaacgcttaccgtcgcgatctgtcaatgatggtGgagtggttgcatcaccgcgg -35 -10 +1 |
AATGA | GAACGC | [AIPP] [TIM] |
[1] | |
ecpRp | 311393 | ecpR | 57 | gaaaataattaaacttaatctcgtttaacctttattgatatgtactacgtatcttatttaCttccggtttactaaggaaac -35 -10 +1 |
TATCTTA | TAACCTT | [ICWHO] | [15] | |
eptBp | 3710581 | eptB | 106 | tttgtgcttcatgcacactctttccccacactttttccctttgctgtggtctacttattcGcgcgtgtagattttacttat -35 -10 +1 |
TACTTA | CTTTTT | [TIM] | [16] [17] |
|
eptBp | 3710581 | eptB | 106 | tttgtgcttcatgcacactctttccccacactttttccctttgctgtggtctacttattcGcgcgtgtagattttacttat -10 +1 |
TGGTCTACT | [TIM] | [16] [17] |
||
essDp | 576873 | essD, rrrD, rzpD | 525 | ttaattttttcatcgtgagccctttttttgaactattattaaaaaatgatgtcactgcgcGataaatattcatctaatcaa -35 -10 +1 |
GTCACT | TGAACTA | [AIPP] [TIM] |
[1] [18] |
|
fadMp1 | 464360 | fadM | 42 | accctgtaattaatttgcatagtggcaattttttgccagactgaagaggtcataccagttAtgacctctgtacttataaca -35 -10 +1 |
GGTCATA | GGCAATT | [ICWHO] | [15] | |
fkpAp1 | 3477525 | fkpA | 106 | gagacagcactcatttcgcggtcatcgaaactaatttaaacaaaaagagtctgaaaatagAtgataatagggcgtgtctgt -35 -10 +1 |
TCTGA | AAACTA | [AIPP] [CV(RS-EPT-CBR)] [CV(TIM)] [IHBCE] [RS-EPT-CBR] [TIM] |
[19] [3] [1] [4] [13] |
|
ftnBp | 1986775 | ftnB | 150 | atttcatcaatgaaatgtaaaaatatataaacttgatgatttaagcattttcttatacccGttcagacgttattcttattt -35 -10 +1 |
TCTTA | AAACTT | [AIPP] [TIM] |
[1] | |
fusAp | 3473685 | tufA, fusA | 171 | gataaatccatggctctgcgcctggcgaacgaactttctgatgctgcagaaaacaaaggtActgcagttaagaaacgtgaa -35 -10 +1 |
ACAAA | GAACTT | [AIPP] [TIM] |
[2] [1] |
|
greAp2 | 3328853 | greA | 138 | ccctataaagtaaacgatgacccttcgggaacttcagggtaaaatgactatcaaaatgtgAattgtagctgacctgggact -35 -10 +1 |
TCAAA | GAACTT | [AIPP] [TIM] |
[20] [1] |
|
gspAp4 | 3455634 | gspB, gspA | 236 | atggaaataattcacattaaaaataatcgaccctatgcttataaatataatcaatatattGatggcagcatctttattatg -35 -10 +1 |
TCAAT | GACCCT | [AIPP] [TIM] |
[1] | |
hcpp2 | 914129 | hcr, hcp | 315 | cgcggcgttttttaatgatctggcccgtgaactgattgctattatgttgatccctgggctGattcgccgcagccgctctac -35 -10 +1 |
GTTGA | GCCCGT | [AIPP] [TIM] |
[1] | |
hlpAp | 200455 | skp, lpxD, fabZ, lpxA | 27 | cgatgactttaggcgatcaatataagatcgccgggccacgcaaagaactgcaccctccggTgcaaatgggatggtaaggag -35 -10 +1 |
CTGCA | GATCGC | [HIPP] [TIM] |
[3] | |
hokEp | 607731 | hokE | 105 | gaagggtaagataacggcgggtgcctgaagctttccggtttcaggtttactctgaggtctGgaaagatgaagccccaggag -35 -10 +1 |
TCTGA | AAGCTT | [AIPP] | [21] | |
ibaGp2 | 3336886 | ibaG | 83 | tatggcgttaaccgcctgtccggcaaacctgcctgcaagtcgagccttgtctgatttatcAgcgaggctttttgcttattt -35 -10 +1 |
TCTGA | AACCTG | [HIPP] [ICWHO] |
[21] [15] |
|
impp3 | 57336 | pdxA, surA, lptD | 227 | ggccacgccaatgatttttccccaatactgcatatattccccaaatcgacacacggatatCagggctatctcccacaatat -35 -10 +1 |
ACGGA | GCATAT | [HIPP] [TIM] |
[3] | |
insKp | 3721065 | insK | 133 | aagctggtttacgcgcgctcaagattggcaccaaaagaaacattgcaatatcagttgatcCagaaaaagcggcatcagcat -35 -10 +1 |
GTTGA | CAAAAG | [HIPP] | [21] | |
lgoRp4 | 4595947 | lgoR | 96 | aacattcatcgtagacatgattcggctctccactttttgttgccttagatatcaatgaaaAtgaaaaatggcagcggaacg -35 -10 +1 |
TATCAAT | TCCACTT | [ICWHO] | [15] | |
lhrp | 1728353 | lhr | 734 | caagtaatatttgtcataatgcgcgctgcaatttatccgtattaagagaatcagatgtccGataacgctcaacttaccggt -35 -10 +1 |
TCAGA | GCAATT | [AIPP] [TIM] |
[1] | |
lptAp1 | 3343326 | lptA, lptB | 54 | cctctgaagacctcgtcacgttatacggaacaacatttaactccagcggtctgaaaatgcGcggcaacttacgcagcaaga -35 -10 +1 |
TCTGA | GAACAA | [CV(TIM)] [HIPP] [IDA] [IMP] [TIM] |
[22] [23] [24] |
|
lptBp | 3343396 | lptB, rpoN, hpf, ptsN, rapZ | 548 | acgcagcaagaacgccgagctgattgaaaaggttagaacatcctatgaaattcaaaacaaAcaaactcagccttaatcttg -35 -10 +1 |
TCAAA | AAAGGT | [AIPP] [TIM] |
[1] | |
lpxDp | 200960 | lpxD | 11 | acgccgttgcttacaacagcagcgatgtaaaagacatcactgccgacgtactgaaacaggTtaaataagtaatgccttcaa -35 -10 +1 |
ACTGA | AAAAGA | [HIPP] [TIM] |
[3] | |
lpxPp | 2495578 | lpxP | 67 | tgtcctgactagtctttacactctttacaggaaccattgtcgtacatgatggcccaaccaAttgagtgtaccgctgtcgac -35 -10 +1 |
GCCCA | GAACCA | [AIPP] [HIPP] [TIM] |
[2] [1] |
|
malQp | 3550399 | malQ | 329 | aaaatatctttatttttggtcataccgtggaacaagtgaaggcaattctggccaaaggctAcgacccggtgaaatggcgga -35 -10 +1 |
GCCAA | GAACAA | [AIPP] [TIM] |
[1] | |
micAp | 2814802 | micA | 0 | ctccggtaatttttttaaaaattttctgaactctttcttcccaggcgagtctgagtatatGaaagacgcgcatttgttatc -35 -10 +1 |
TCTGA | GAACTC | [HIPP] [TIM] |
[25] [26] |
|
micLp | 1958747 | micL | 227 | gcactgcaaggtttatcaaaaattatggaacttattgcccatcgtgatgctccaatcattAtggccggagcaggagtccgt -35 -10 +1 |
TCCAA | GAACTT | [CV(RS-EPT-CBR)] [CV(TIM)] [RS-EPT-CBR] [TIM] |
[27] [4] |
|
narWp | 1538687 | narV, narW | 1378 | tggagtacgcatggtttaacaacgtcgaaaccaaaccgggcattggttatccgaaaaactGggaagatcaggaagagtggc -35 -10 +1 |
TCCGA | AAACCA | [AIPP] [TIM] |
[1] | |
opgGp2 | 1109257 | opgG, opgH | 78 | tgcttaatccatgagccagcgtgctgaacgataccgggattctgttgtcggaatggctggTtatccattaaaatagatcgg -35 -10 +1 |
AATGGC | TGAACG | [CV(TIM)] [HIPP] [IDA] [TIM] |
[3] [1] [28] |
|
opgGp2 | 1109257 | opgG, opgH | 78 | tgcttaatccatgagccagcgtgctgaacgataccgggattctgttgtcggaatggctggTtatccattaaaatagatcgg -35 -10 +1 |
TCGGA | GAACGA | [CV(TIM)] [HIPP] [IDA] [TIM] |
[3] [1] [28] |
|
phoQp5 | 1189940 | phoQ | 164 | ctgaccgcgttcgaatacactattatggaaacgttgatacgcaataatggcaaagtggtcAgcaaagattcgttaatgctc -35 -10 +1 |
TGGCAAA | GAAACGT | [ICWHO] | [15] | |
plsBp | 4256598 | plsB | 132 | atccagtggtattattggccattgaaagaacctttttacattatgagcgtcaatatcagtGtaccgttaaatccgatgatt -35 -10 +1 |
TATCA | AACCTT | [AIPP] [IEP] [TIM] |
[1] [29] |
|
psdp | 4390638 | mscM, psd | 278 | gtgagttcggcctctggcacctggagccggaacaaatcactcagggctttgtcgaattccAtgactatttaggtctgtgta -35 -10 +1 |
TCGAA | GAACAA | [AIPP] [TIM] |
[2] [1] |
|
rfaDp4 | 3793970 | rfaD, waaF, waaC, waaL | 17 | gattcggatgtgatggtatgattacagacattcgtgtctgagattgtctctgactccataAttcgaaggttacagttatga -35 -10 +1 |
TCTGA | GACATT | [HIPP] [TIM] |
[3] | |
rnlBp | 2766707 | rnlB | 277 | cctgactactgtatgttactttatcctgaactacgcaccattgaaggtgtcttaaaaagtAagatgagtgggttaggcatg -35 -10 +1 |
TCTTA | GAACTA | [AIPP] [CV(RS-EPT-CBR)] [CV(TIM)] [RS-EPT-CBR] [TIM] |
[1] [4] |
|
rpoDp4 | 3212693 | rpoD | 354 | tacaaataatgctgccacccttgaaaaactgtcgatgtgggacgatatagcagataagaaTattgctgagcaaaccttcac -35 -10 +1 |
GCAGA | AAACTG | [AIPP] [TIM] |
[3] | |
rpoEp2a | 2710087 | rseC, rseB, rseA, rpoE | 75 | tgacaaacaaaaacagatgcgttacggaactttacaaaaacgagacactctaaccctttgCttgctcaaattgcagctaat -35 -10 +1 |
GACACT | ATGCGT | [HIPP] [TIM] |
[30] [31] [11] [32] [13] |
|
rpoEp2a | 2710087 | rseC, rseB, rseA, rpoE | 75 | tgacaaacaaaaacagatgcgttacggaactttacaaaaacgagacactctaaccctttgCttgctcaaattgcagctaat -35 -10 +1 |
TCTAA | GAACTT | [HIPP] [TIM] |
[30] [31] [11] [32] [13] |
|
rpoHp3 | 3600870 | rpoH | 87 | tgcgtaatttattcacaagcttgcattgaacttgtggataaaatcacggtctgataaaacAgtgaatgataacctcgttgc -35 -10 +1 |
TCTGA | GAACTT | [AIPP] [CV(RS-EPT-CBR)] [CV(TIM)] [HIPP] [RS-EPT-CBR] [TIM] |
[33] [34] [35] [36] [37] [1] [4] [13] |
|
rseAp3 | 2709632 | rseC, rseB, rseA | 228 | aagtggcggcgcgttgaaagaaatttcgaaccctgagaacttaatgttgtcagaagaactGagacagatagttttccgaac -35 -10 +1 |
TCAGA | GAACCC | [AIPP] [TIM] |
[31] [1] |
|
rsePp | 196470 | rseP | 76 | caggaattaaggacagcggtcatttaattccaggacacggtggtattttagatcgtattgAtagcctgacggctgcggtac -35 -10 +1 |
TCGTA | CCAGGA | [HIPP] [TIM] |
[3] | |
rutRp | 1074134 | rutR | 108 | ttattaatctgttaacattacgttatctaaaatatctggtaaaaagtggactaaacggtcAaaacagttgcacataaaaca -35 -10 +1 |
ACTAA | AAAATA | [AIPP] [TIM] |
[1] | |
rybBp | 888057 | rybB | 0 | aaaatgaaatttttttgcacaaccgcagaacttttccgcagggcatcagtcttaattagtGccactgcttttctttgatgt -35 -10 +1 |
TCTTA | GAACTT | [CV(RS-EPT-CBR)] [CV(TIM)] [HIPP] [IDA] [RS-EPT-CBR] [TIM] |
[26] [4] [38] [39] |
|
sbmAp | 396553 | sbmA, yaiW | 86 | tcgaaacaattcttatggtcaggctggcgaactaagcgccttgctatgggtcacaatgggCggtttcatttggctgacgct -35 -10 +1 |
TCACA | GAACTA | [AIPP] [HIPP] [TIM] |
[2] [1] |
|
sixAp | 2456999 | sixA | 187 | cgtggggaaagtttttggaaaacaactgcaactgacctgcaataagaaggtcaaagctatAtgaatccgcgctgaatggcg -35 -10 +1 |
AAAGCT | CTGCAA | [AIPP] [CV(TIM)] [IDA] [TIM] |
[2] [1] [28] |
|
sixAp | 2456999 | sixA | 187 | cgtggggaaagtttttggaaaacaactgcaactgacctgcaataagaaggtcaaagctatAtgaatccgcgctgaatggcg -35 -10 +1 |
TCAAA | CAACTG | [AIPP] [CV(TIM)] [IDA] [TIM] |
[2] [1] [28] |
|
surAp | null | apaH, apaG, rsmA, pdxA, surA | [NAS] [TASES] |
[40] [41] [42] |
|||||
wzap2 | 2137193 | wzc, wzb, wza | -50 | taaataaacaatgatgaaatccaaaatgaaattgatgccattattggtgtcagtaaccttGataagcggttgcacagtact |
[AIPP] [TIM] |
[1] | |||
ybaBp | 493709 | ybaB, recR | 367 | cgcgacccgtgggcggcacaggtgagccaactttcgctaccaaaactggtcgaacaggtgGcgttaaatgcctggaaagag -35 -10 +1 |
TCGAA | CAACTT | [AIPP] [TIM] |
[2] [1] |
|
ybfHp | 716641 | ybfG | 44 | ataaagtcattttttattcaaatataaggaacttaatatttaaaaaatgttccatacaatTcctcatcataaatgacaccg -35 -10 +1 |
TCCAT | GGAACTT | [AIPP] [TIM] |
[1] | |
ydhIp | 1720998 | ydhI, ydhJ, ydhK | 27 | ttttcagaaattgcgcgtaaatttttcgcacttaaagaatatttattaatctaacgcaatAtattcggtcgtaaaggaatc -35 -10 +1 |
TCTAA | GCACTT | [AIPP] [TIM] |
[1] | |
ydiVp | 1792087 | ydiV | 67 | aaaggacccctgaaaaagtggttaacatggaacaaatgaaagttactccttctgtaattgTtatgtcttatggcctcatcc -35 -10 +1 |
TGTAA | GAACAA | [AIPP] | [21] | |
yeaYp | 1890561 | yeaY | 29 | tttatttacgtaacaacgtcgcatggaagaaacttccgggcaaagaatgaatcttaagagTatgccctgagaaaaaaagga -35 -10 +1 |
TCTTA | AAACTT | [AIPP] [HIPP] [TIM] |
[2] [1] |
|
yfeKp | 2537315 | yfeK, yfeS | 27 | ccgatgatcctcatcgtaatccaaccgaaactttacctgattctggcagtcaaatcggctAtcacaaaacaaggataaggt -35 -10 +1 |
TCAAA | AAACTT | [AIPP] [TIM] |
[1] | |
yfeYp | 2551243 | yfeX, yfeY | 27 | gcttgtttttatgaagtaaaagaataacggcactttttggtgaatttgcactccaagcaaCgttattgaataaccaaagga -35 -10 +1 |
TCCAA | GCACTT | [AIPP] [TIM] |
[2] [1] |
|
yggNp1 | 3101798 | yggN | 175 | caaactggatgaggtacgcaccagcgaacttttcgacgtttggtgggactaagaaagcatAcgggcgatgacaaatgcaaa -35 -10 +1 |
ACTAA | GAACTT | [HIPP] [TIM] |
[3] [1] [13] |
|
yggNp2 | 3101744 | yggN | 121 | aagcatacgggcgatgacaaatgcaaaactgcctgatgcgctacgcttatcaggcctggaAagatgcacgatcgagtaggc -35 -10 +1 |
TATCA | AAACTG | [HIPP] [TIM] |
[3] | |
yghFp | 3112899 | yghF | -150 | aatacagacaaagagcatctgcgaaaaattgcacgcgggatgttctggctgatgctgcttAttatttctgcaaaaatggcg -35 -10 +1 |
GCTGA | AAAATT | [HIPP] [TIM] |
[3] | |
ygiMp | 3201104 | ygiM | 103 | attttgcgccaaattgccatgcaacgggcaatttgacgggcgtaaaagtttgaagcagtgGcaagacctgacacagaggat -35 -10 +1 |
AAGCA | CAATTT | [HIPP] [TIM] |
[3] | |
ygiMp2 | 3201042 | ygiM, cca | 165 | ttatgtcacataagtgacgatgaacggcgaacttaatgcgatcttttttgtcagtagataGtattttgcgccaaattgcca -35 -10 +1 |
TCAGT | GAACTT | [AIPP] [TIM] |
[1] | |
yhjJp | 3682016 | yhjJ | 76 | tgagttcaggtttatttcacttcttccgtgacattttcatgttcttgcggtctaacacgaAgtgtttttaacgtcatttag -35 -10 +1 |
TCTAA | GACATT | [AIPP] [TIM] |
[1] | |
yiaKp2 | 3742720 | yiaK, yiaL, yiaM, yiaN, yiaO, lyxK, sgbH, sgbU, sgbE | 13 | tatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacAaggaagcctgggatgaaagt -35 -10 +1 |
TCAAA | GAAATT | [AIPP] [TIM] |
[1] | |
yicJp | 3836664 | yicI, yicJ | 735 | aaaacaagttgatttgatatattaaatgaacaaattaatcttgatggcagtctgattattGgtgaagtttatagtcagttt -35 -10 +1 |
TCTGA | GAACAA | [AIPP] [TIM] |
[1] | |
yidQp | 3867544 | yidQ | 184 | ccagaacacccatcaggcgcgtcctcatcggctacgatgtaaaaatgggtctggaaatgaActtttcaagccttatcagcg -35 -10 +1 |
AATGA | CTACGA | [HIPP] [TIM] |
[3] | |
yieEp | 3893829 | yieE, yieF | 52 | aaagttgtaataagcttgtctgaatcgaacttttagccgctttagtctgtccatcattccAgtaaatgattactcttgtat -35 -10 +1 |
CATCA | GAACTT | [AIPP] [TIM] |
[1] | |
yiiSp | 4112869 | yiiS, uspD | 98 | gcaaatgacaatacccggaaaatccttctgaactcttcaccttaagcaatatcaaaaaaaAtggtaatccataagatcatt -35 -10 +1 |
TCAAA | GAACTC | [AIPP] [TIM] |
[2] [1] |
|
ykgCp1 | 320215 | rclC, rclB, rclA | 214 | tcgttccttgtggagcgttaagcatcaacaaacggctaagggcatccatatcagactcctGagtggtttttgattacaaac -35 -10 +1 |
TATCAGA | TCAACAA | [ICWHO] | [15] | |
yoaCp1 | 1893966 | yoaC | 167 | agcaactctggttttctttcttagctgaacaatctggttatagcgtgcggactgaccgttAaatttctccatcttactgga -35 -10 +1 |
GGACTGA | TGAACAA | [ICWHO] | [15] | |
yqjAp2 | 3247643 | yqjA, mzrA | 130 | gacctttgttacaattagattcaatttgaatttatgtttttgaatgctttcttatctcacGatttaacagggaatagttca -35 -10 +1 |
TCTCA | TATGTT | [HIPP] [TIM] |
[3] | |
yraPp | 3296349 | yraP | 60 | atccgcattccttcgcatcgtagtgctcgcattcaggaaatgcatatgctgacggtaaatTgcctgtgcgatctgatcgat -35 -10 +1 |
GCTGA | GCTCGC | [HIPP] [TIM] |
[3] | |
yraPp2 | 3296072 | yraP | 337 | aacggagcggcccagcttacctgccattgcactaaatactgataatgttgtcttaacggcGattgccaacgatcgcttaca -35 -10 +1 |
TCTTA | GCACTA | [AIPP] [TIM] |
[1] | |
ytfJp | 4439286 | ytfJ | 24 | gcgggaaattcgataaatagcacatatgattaaaactcagacccaagtggtcggatcaccTgcatatcataagaaggaaac -35 -10 +1 |
TCGGA | GATTAA | [HIPP] [TIM] |
[3] |
Evidence: | [AIPP] Automated inference of promoter position [TIM] Transcription initiation mapping [HIPP] Human inference of promoter position [CV(RS-EPT-CBR)] cross validation(RS-EPT-CBR) [CV(TIM)] cross validation(TIM) [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates [HTIM] High-throughput transcription initiation mapping [ICWHO] Inferred computationally without human oversight [IHBCE] Inferred by a human based on computational evidence [IDA] Inferred from direct assay [IMP] Inferred from mutant phenotype [IEP] Inferred from expression pattern [NAS] Non-traceable author statement [TASES] Traceable author statement to experimental support |
Reference(s) |
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