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Name: | Sigma32      Signal transduction |
Synonyms: | RpoH |
Gene name: | rpoH |
Sigmulon regulators: | |
Sigmulon Genes: |
![]() ackA, adiC, alaA, bssS, cas1, cas2, casD, casE, clpP, clpX, cnoX, cra, creA, creB, creC, crr, dnaJ, dnaK, fkpB, ftsH,
fxsA, gapA, grpE, hemW, hflC, hflK, hflX, hfq, holC, hslO, hslR, hslU, hslV, hspQ, htpG, htpX, ibpA, ibpB, ileS, ispH, ldhA, lnt, lspA, mbiA, metA, mhpT, miaA, mngA, mngB, mpaA, mutL, mutM, narP, nfuA, nusB, osmF, pgpA, pgpC, phoP, phoQ, pncC, pphA, ppiD, prlC, ptsH, ptsI, raiA, rdgB, rfaD, ribE, rlmE, rnlA, rpmE, rpoD, rsmJ, sdaA, sdsR, slt, tadA, thiL, topA, tpke11, trmA, tyrR, valS, waaC, waaF, waaL, yafD, yafE, yafU, ybeX, ybeY, ybeZ, ybfE, yccE, ycjF, ycjX, ycjY, ydeO, |
Transcribed promoters | ![]() |
---|
Promoter Name | TSS Position | Transcribed Gene(s) | Distance from TSS to gene |
Promoter Sequence |
Box (-10) |
Box (-35) |
Evidence Code(s) | Reference(s) | |
---|---|---|---|---|---|---|---|---|---|
ackAp | 2413459 | ackA | 11 | ggtgtcatcatgcgctacgctctatggctccctgacgtttttttagccacgtatcaattaTaggtacttccatgtcgagta -35 -10 +1 |
AGCCAC | TGGCTC | [AIPP] | [1] [2] |
|
adiCp7 | 4337202 | adiC | 171 | acagtacgtcgtactttatttctgtctttaaagacttctacggtatgacgccgctgcattAtgttagtcagcacagagaac -35 -10 +1 |
CGCCGC | CTTTAAA | [ICWHO] | [3] | |
alaAp9 | 2407408 | alaA | 153 | aagaatcagaacaattcactatataacattgcatgtaaagcatatacacctcattattttGtcattattaagttattaaca -35 -10 +1 |
CCTCAT | ATTGCAT | [ICWHO] | [3] | |
bssSp1 | 1121058 | bssS | 103 | gctgttttattgttcatataaatcttaaaagcagaaatttatctgtttccccctttaaaaAttcggtgaatacccttactt -35 -10 +1 |
CCCCTT | CAGAAA | [AIPP] [IDA] [IEP] |
[4] [5] |
|
bssSp2 | 1121032 | bssS | 77 | aaaagcagaaatttatctgtttccccctttaaaaattcggtgaatacccttacttattggTatactgaagttgcttcagat -35 -10 +1 |
ACCCTT | TTTAAA | [AIPP] [CV(TA/TIM)] [IDA] [IEP] [TIM] |
[6] [4] [5] |
|
canp | 142703 | can | 33 | ttacgttcttacactttatctgtggtttaaatcgtcccggagttgccctatattagccaaAcgtaattatttggttacagg |
[AIPP] [CV(RS-EPT-CBR/TA)] [HTIM] [IDA] [RS-EPT-CBR] |
[7] [6] [8] |
|||
casDp | null | cas2, cas1, casE, casD | [IDA] [IEP] |
[4] | |||||
clpBp | 2734205 | clpB | 32 | ttttcacattaatctggtcaataaccttgaataattgagggatgacctcatttaatctccAgtagcaactttgatccgtta -35 -10 +1 |
CCTCAT | TTGAAT | [AIPP] [CV(RS-EPT-CBR/TA)] [CV(TA/TIM)] [HIPP] [IDA] [IEP] [RS-EPT-CBR] [TIM] |
[9] [6] [8] [10] [4] |
|
clpBp | 2734205 | clpB | 32 | ttttcacattaatctggtcaataaccttgaataattgagggatgacctcatttaatctccAgtagcaactttgatccgtta -35 -10 +1 |
TAATCT | TTGAAT | [AIPP] [CV(RS-EPT-CBR/TA)] [CV(TA/TIM)] [HIPP] [IDA] [IEP] [RS-EPT-CBR] [TIM] |
[9] [6] [8] [10] [4] |
|
clpPp3 | 456605 | clpP, clpX | 72 | gcgtaacaacaaaagattgttatgcttgaaatatggtgatgccgtacccataacacagggActagctgataatccgtccat -35 -10 +1 |
ACCCAT | TTGAAA | [CV(RS-EPT-CBR/TA)] [CV(TA/TIM)] [IDA] [IEP] [RS-EPT-CBR] [TIM] |
[11] [6] [8] [4] |
|
creAp2 | 4635243 | creA, creB, creC | 278 | ttaaacattctctgtaagtgccacttggaataacctgctttcgccgctacattgtcgagcGacaggggctgatccagatga -35 -10 +1 |
CGCTAC | TTGGAA | [HIPP] [TIM] |
[6] | |
dnaKp1 | 12048 | dnaK, tpke11, dnaJ | 115 | gcacaaaaaatttttgcatctcccccttgatgacgtggtttacgaccccatttagtagtcAaccgcagtgagtgagtctgc -35 -10 +1 |
CCCCAT | TTGATG | [CV(RS-EPT-CBR/TA)] [CV(TA/TIM)] [HIPP] [IDA] [IEP] [RS-EPT-CBR] [TIM] |
[12] [6] [8] [4] [13] [14] |
|
dnaKp2 | 12123 | dnaK, tpke11, dnaJ | 40 | gtctgcaaaaaaatgaaattgggcagttgaaaccagacgtttcgcccctattacagactcAcaaccacatgatgaccgaat -35 -10 +1 |
CCCTAT | TTGAAA | [CV(TA/TIM)] [HIPP] [IDA] [IEP] [TIM] |
[12] [6] [4] [13] [14] |
|
dnaKp3 | 12144 | dnaK, tpke11, dnaJ | 19 | ggcagttgaaaccagacgtttcgcccctattacagactcacaaccacatgatgaccgaatAtatagtggagacgtttagat -35 -10 +1 |
CCACAT | CCTATT | [CV(TA/TIM)] [HIPP] [IDA] [IEP] [TIM] |
[12] [4] [13] [14] |
|
fruRp8 | 87947 | cra | 81 | cgttgggctttttttgcgaaatcagtgggaacctggaataaaagcagttgccgcagttaaTtttctgcgcttagatgttaa -35 -10 +1 |
CCGCAG | CTGGAAT | [ICWHO] | [3] | |
fxsAp | 4368603 | fxsA | 61 | ctaccaaaaatagttgcgcaaacatcttgaaattttgctaatgaccacaatataagctaaAcgcgattcgcaacccattca -35 -10 +1 |
CCACAA | TTGAAA | [AIPP] [CV(TA/TIM)] [HIPP] [IDA] [IEP] [TIM] |
[6] [4] [15] |
|
gapAp2 | 1862618 | gapA, yeaD | 153 | atcacatttttatcgtaattgccctttaaaattcggggcgccgaccccatgtggtctcaaGcccaaaggaagagtgaggcg -35 -10 +1 |
CCCCAT | TTTAAA | [AIPP] [CV(TA/TIM)] [HIPP] [IDA] [TIM] |
[16] [17] [6] [18] [4] |
|
glnSp2 | 705999 | glnS | 94 | aagcggtggagatcttctctgccgctttttttttcatcaatcatccccataatccttgttAgattatcaattttaaaaaac -35 -10 +1 |
CATAAT | TTTTTT | [IDA] | [6] | |
glnSp2 | 705999 | glnS | 94 | aagcggtggagatcttctctgccgctttttttttcatcaatcatccccataatccttgttAgattatcaattttaaaaaac -35 -10 +1 |
CCCCAT | TTTTTT | [IDA] | [6] | |
groSp | 4370616 | groS, groL | 72 | cagaattttttttctttttcccccttgaaggggcgaagcctcatccccatttctctggtcAccagccgggaaaccacgtaa -35 -10 +1 |
CATTTC | TTGAAG | [AIPP] [CV(RS-EPT-CBR/TA)] [HIPP] [IDA] [IEP] [RS-EPT-CBR] |
[12] [6] [8] [4] [13] [19] [20] |
|
groSp | 4370616 | groS, groL | 72 | cagaattttttttctttttcccccttgaaggggcgaagcctcatccccatttctctggtcAccagccgggaaaccacgtaa -35 -10 +1 |
CCCCAT | TTGAAG | [AIPP] [CV(RS-EPT-CBR/TA)] [HIPP] [IDA] [IEP] [RS-EPT-CBR] |
[12] [6] [8] [4] [13] [19] [20] |
|
grpEp | 2750747 | grpE | 39 | gattgatgacaatgtgagtgcttcccttgaaaccctgaaactgatccccataataagcgaAgttagcgagatgaatgcgaa -35 -10 +1 |
CCCCAT | TTGAAA | [AIPP] [CV(RS-EPT-CBR/TA)] [CV(TA/TIM)] [HIPP] [IDA] [IEP] [RS-EPT-CBR] [TIM] |
[21] [6] [8] [4] |
|
hepAp2 | 63588 | rapA | 324 | agaaaaccaaaagcgtggtcgccccttgcaatatcagaatcgcggcaccattaagtacgtAtggaccaccaacggcccgga -35 -10 +1 |
CACCAT | CTTGCA | [CV(RS-EPT-CBR/TA)] [CV(TA/TIM)] [HIPP] [IDA] [IEP] [RS-EPT-CBR] [TIM] |
[6] [8] [4] |
|
hepAp2 | 63588 | rapA | 324 | agaaaaccaaaagcgtggtcgccccttgcaatatcagaatcgcggcaccattaagtacgtAtggaccaccaacggcccgga -35 -10 +1 |
CACCAT | TTGCAA | [CV(RS-EPT-CBR/TA)] [CV(TA/TIM)] [HIPP] [IDA] [IEP] [RS-EPT-CBR] [TIM] |
[6] [8] [4] |
|
hfqp1 | null | hfq, hflX, hflK, hflC | [CV(TA/TIM)] [HIPP] [IDA] [IEP] [TIM] |
[22] | |||||
holCp | 4484273 | valS, holC | -7 | cgctgcggtgtatacctgatgcgtatttaaatccaccacaagaagccccatttatgaaaaAcgcgacgttctaccttctgg -35 -10 +1 |
CCCCAT | TTTAAA | [AIPP] [CV(TA/TIM)] [IDA] [IEP] [TIM] |
[6] [4] |
|
hslRp | 3529110 | hslR, hslO | 238 | gagcataccggtctggacgcacaccttgatttattactttccacccacacatttggttatCcgaaagaggatcagcggtta -35 -10 +1 |
ACCCAC | TTGATT | [AIPP] [TIM] |
[6] | |
hslVp | 4122354 | hslU, hslV | 67 | atacaaactgcattcggctcgccgccgggggttgaaaccctcaaaatcccccccatctatAattgcattatgccccgtact -35 -10 +1 |
CCCCAT | TTGAAA | [AIPP] [CV(TA/TIM)] [HIPP] [IDA] [IEP] [TIM] |
[23] [6] [4] [13] |
|
hspQp | null | hspQ | [IDA] [IEP] |
[4] | |||||
htgAp1 | 10644 | mbiA | 186 | gtggggcagtgtctacgatcttttgaggggaaaatgaaaattttccccggtttccggtatCagacctgagtggcgctaacc |
[HIPP] [TIM] |
[24] [25] |
|||
htpGp1 | 495075 | htpG | 45 | acgagagcaggatcacctgctctcgcttgaaattattctcccttgtccccatctctcccaCatcctgtttttaaccttaaa -35 -10 +1 |
CCCCAT | TTGAAA | [AIPP] [CV(TA/TIM)] [HIPP] [IDA] [IEP] [TIM] |
[26] [12] [6] [4] [14] |
|
htpGp2 | 495084 | htpG | 36 | ggatcacctgctctcgcttgaaattattctcccttgtccccatctctcccacatcctgttTttaaccttaaaatggcatta -35 -10 +1 |
CCACAT | CTTGTC | [AIPP] [CV(TA/TIM)] [HIPP] [IDA] [IEP] [TIM] |
[12] [6] [4] [14] |
|
htpXp | 1912618 | htpX | 42 | tctggtgacttacgcactatccagacttgaaaatagtcgcgtaacccatacgatgtgggtAtcgcatattgcgttttgtta -35 -10 +1 |
ACCCAT | TTGAAA | [AIPP] [CV(RS-EPT-CBR/TA)] [CV(TA/TIM)] [HIPP] [IDA] [IEP] [RS-EPT-CBR] [TIM] |
[27] [6] [8] [4] |
|
ibpAp | 3867518 | ibpB, ibpA | 96 | tgcaaaaaaaagtccgctgataaggcttgaaaagttcatttccagacccatttttacatcGtagccgatgaggacgcgcct -35 -10 +1 |
ACCCAT | TTGAAA | [AIPP] [CV(TA/TIM)] [HIPP] [IDA] [IEP] [TIM] |
[28] [23] [29] [30] [6] [4] |
|
ileSp3 | 22229 | ileS, lspA, fkpB, ispH | 162 | cagctggaagtgcatttgttagatgttgcaatggacctttacggtcgccatatacaagtaGtgctgcgtaaaaaaatacgc -35 -10 +1 |
CGCCAT | TTGCAA | [AIPP] [CV(RS-EPT-CBR/TA)] [CV(TA/TIM)] [RS-EPT-CBR] [TIM] |
[6] [8] |
|
lapAp1 | 1340135 | lapA, lapB, pyrF, yciH | 108 | aacgagaacaagaaagttaacgctggttgattttccgaatttagcccttaaatcatcaacAatgcgtgtggatgccatttc -35 -10 +1 |
AATCAT | TTGATT | [AIPP] [CV(TA/TIM)] [IDA] [IEP] [TIM] |
[31] [6] [4] |
|
lapAp1 | 1340135 | lapA, lapB, pyrF, yciH | 108 | aacgagaacaagaaagttaacgctggttgattttccgaatttagcccttaaatcatcaacAatgcgtgtggatgccatttc -35 -10 +1 |
GCCCTT | GTTGATT | [AIPP] [CV(TA/TIM)] [IDA] [IEP] [TIM] |
[31] [6] [4] |
|
ldhAp | 1442915 | ldhA | 72 | gaaggttgcgcctacactaagcatagttgttgatgaatttttcaatatcgccatagctttCaattaaatttgaaattttgt -35 -10 +1 |
CGCCAT | TTGATG | [AIPP] [IDA] [IEP] |
[32] [4] [5] |
|
lonp | 458815 | lon | 73 | taatttttcctctattctcggcgttgaatgtgggggaaacatccccatatactgacgtacAtgttaatagatggcgtgaag -35 -10 +1 |
CCCCAT | TTGAAT | [CV(RS-EPT-CBR/TA)] [HIPP] [IDA] [IEP] [RS-EPT-CBR] |
[33] [6] [8] [4] |
|
lonp | 458815 | lon | 73 | taatttttcctctattctcggcgttgaatgtgggggaaacatccccatatactgacgtacAtgttaatagatggcgtgaag -35 -10 +1 |
TATACT | TTGAAT | [CV(RS-EPT-CBR/TA)] [HIPP] [IDA] [IEP] [RS-EPT-CBR] |
[33] [6] [8] [4] |
|
metAp1 | 4214233 | metA | 47 | aactttctcaccttcaacatgcaggctcgacattggcaaattttctggttatcttcagctAtctggatgtctaaacgtata -35 -10 +1 |
CTTCAG | TGGCAA | [CV(RS-EPT-CBR/TA)] [CV(TA/TIM)] [RS-EPT-CBR] [TIM] |
[34] [35] [8] |
|
mhpTp | 375386 | mhpT | 73 | acacgactgccggatgcgataaacgtcttgtccggcctacatttcgcccgtaggcagtcaTtaaatagttctgattacgcg -35 -10 +1 |
CGCCCG | TTGTCC | [AIPP] | [1] | |
miaAp2 | 4398982 | miaA, hfq, hflX, hflK, hflC | 270 | agtctgccctggcggaattgggtattgatttccagtcagatgcacagcatgtgaccatcaGggcagtgcctttacccttac -35 -10 +1 |
CAGCAT | TTGATT | [CV(TA/TIM)] [HIPP] [IDA] [IEP] [TIM] |
[22] | |
mlcp2 | 1668591 | ynfK, mlc | 27 | cctaagtaaaaatttgacgacacgtattgaagtgcttcaccatagcctacagattatttcGgagcgcgaaaatatagggag -35 -10 +1 |
CTACAG | TTGAAG | [AIPP] [TIM] |
[36] [6] [37] |
|
mlcp2 | 1668591 | ynfK, mlc | 27 | cctaagtaaaaatttgacgacacgtattgaagtgcttcaccatagcctacagattatttcGgagcgcgaaaatatagggag -35 -10 +1 |
GATTAT | TTGAAG | [AIPP] [TIM] |
[36] [6] [37] |
|
mngAp | 765811 | mngA, mngB | 173 | ctgacgccaaactctgtttgtagcgctgattcagtgggtaacgcatcgccaggtttaagcTcgccacgcgcaatttgttca -35 -10 +1 |
CGCCAG | TTCAGT | [HIPP] [IC] |
[1] [38] |
|
mutLp2 | 4397046 | mutL, miaA, hfq, hflX, hflK, hflC | 366 | ctgctgggtggggcgggtgatgtgctggcgaacagtcagtctgacccctatttaagccagGcggtgctggatttacagttc -35 -10 +1 |
CCCTAT | TGGCGA | [CV(TA/TIM)] [HIPP] [IDA] [IEP] [TIM] |
[22] | |
mutMp | 3811175 | mutM | 23 | taacaaaaaacctcgctccggcggggttttttgttatctgcttgcccccatattgactgcAtctgttcattcctggagatg -35 -10 +1 |
CCCCAT | TTTTTT | [AIPP] [TIM] |
[39] [6] [5] |
|
narPp | 2290422 | narP | 78 | atgatgccaaagcgaacgacaaggttgtagttttcactacatgtccatacataaaatgggGtaacattcacgcgcctggta -35 -10 +1 |
GTCCAT | TTGTAG | [AIPP] [CV(TA/TIM)] [IDA] [IEP] [TIM] |
[6] [4] |
|
nfuAp2 | 3545458 | nfuA | 166 | cgcaacctgaaaaatgcctttcgtcttgaattgcccgtgcaaggtcgccatatggtgattGtggatgatgtcgttaccacc -35 -10 +1 |
CGCCAT | TTGAAT | [AIPP] [CV(RS-EPT-CBR/TA)] [CV(TA/TIM)] [RS-EPT-CBR] [TIM] |
[6] [8] |
|
osmFp2 | null | yehW, yehX, yehY, osmF | [IDA] [IEP] |
[4] | |||||
pgpCp | 2698638 | tadA, pgpC | 88 | tttatattccattgccgctaattgccatgaattaaaaattccagttagccatgatgcggtCgattgttgccggaaaagtga -35 -10 +1 |
AGCCAT | ATGAAT | [AIPP] | [7] | |
phoPp3 | 1190491 | phoQ, phoP | 44 | tttttcactttacctcccctccccgctggtttatttaatgtttacccccataaccacataAtcgcgttacactattttaat -35 -10 +1 |
CCCCAT | TTTATT | [AIPP] [CV(TA/TIM)] [IDA] [IEP] [TIM] |
[6] [4] |
|
pncCp | 2824394 | pncC | 48 | taatcagcttttttctgaatcctcctcgtaaaattgcaacgccaacaccatcttcctgacGaaagtgctatcttgtccggc -35 -10 +1 |
CACCAT | TCGTAA | [HIPP] [TIM] |
[6] | |
pphAp | 1923385 | pphA, sdsR | 178 | attcagattgatgatcctaacaatcccggcgaaaaaatgagtctggcaccgtttatagaaCgagctgaaaaactctgttaa -35 -10 +1 |
CACCGT | GCGAAA | [AIPP] [TIM] |
[40] | |
ppiDp1 | 461838 | ppiD | 77 | cttttttatttgtattcggtgactttctgcgtcttgtgggctgacaattgcccccgtttcTtgtcacaataggcctttgcg -35 -10 +1 |
CCCCGT | TTGTGG | [HIPP] [TIM] |
[41] | |
prlCp | 3645238 | rsmJ, prlC | 56 | cgccgcgaaagcgtaacgtttctcattgaaattcactacacttaaccccatgctacacacAttatgtaaagcgcctgttga -35 -10 +1 |
CCCCAT | TTGAAA | [AIPP] [CV(RS-EPT-CBR/TA)] [IDA] [IEP] [RS-EPT-CBR] |
[6] [8] [4] |
|
ptsHp4 | 2533501 | ptsH, ptsI, crr | 263 | tcaaactttcgcccctcctggcattgattcagcctgtcggaactggtatttaaccagactAattattttgatgcgcgaaat -35 -10 +1 |
TATTTA | TTGATT | [CV(RS-EPT-CBR/TA)] [CV(TA/TIM)] [HIPP] [RS-EPT-CBR] [TIM] |
[42] [43] [44] [8] |
|
ptsHp4 | 2533501 | ptsH, ptsI, crr | 263 | tcaaactttcgcccctcctggcattgattcagcctgtcggaactggtatttaaccagactAattattttgatgcgcgaaat -35 -10 +1 |
TGGTATTTA | TCCTGGCATTGAT | [CV(RS-EPT-CBR/TA)] [CV(TA/TIM)] [HIPP] [RS-EPT-CBR] [TIM] |
[42] [43] [44] [8] |
|
ptsHp5 | 2533498 | ptsH, ptsI, crr | 266 | gcttcaaactttcgcccctcctggcattgattcagcctgtcggaactggtatttaaccagActaattattttgatgcgcga |
[TIM] | [45] [44] |
|||
raiAp | 2737104 | raiA | 50 | aaaagattcgttgacaaaaagtgacaaaattatgagattttcatcacacattttgacatcAggaacggtatgctgaattca |
[IDA] [IEP] |
[4] | |||
rdgBp | 3096620 | rdgB, hemW | 61 | cgggttgccaaaagccaggtggtgattgaaaaaggcgaacttggccgccacaaacaaattAaaatcattaatccgcaacaa -35 -10 +1 |
CGCCAC | TTGAAA | [AIPP] [TIM] |
[6] | |
rfaDp3 | 3793865 | rfaD, waaF, waaC, waaL | 122 | gcactattcacatgcaaaaccaacatccgccatgaaggactagctaaaacccaaactagtTtgttgcaattagcatccttg -35 -10 +1 |
ACCCAA | ATGAAG | [TIM] | [46] | |
ribEp | 434504 | ribE, nusB, thiL, pgpA | 143 | ccgcggattatgcacgctgccagggcttgagaaattagccgacgccccccaatttaaattCaaagagatacgtcatgtagg -35 -10 +1 |
CCCCAA | TTGAGA | [AIPP] [CV(RS-EPT-CBR/TA)] [CV(TA/TIM)] [RS-EPT-CBR] [TIM] |
[6] [8] |
|
rlmEp2 | 3327731 | ftsH, rlmE | 67 | atcgtattttttgcttacgttgggattgaaaacgggtcattctaccgccatctcccatatAtcaccaaataggcgcgtaaa -35 -10 +1 |
CGCCAT | TTGAAA | [AIPP] [CV(TA/TIM)] [HIPP] [IDA] [IEP] [TIM] |
[47] [6] [4] |
|
rnlAp | 2765906 | rnlA | 12 | tttagcaaatcaatacacttcaggggggtattattgtagagtttccccatatgtttctatGggatccaggaaatgacaatc -35 -10 +1 |
CCCCAT | GGGTAT | [AIPP] [IDA] |
[6] | |
rpmEp | 4126908 | rpmE | 105 | cacattgccgtagaagagtgcggatcagtttgcatacgctggttaatttctgtatgatttCgcgccttcgtacgaaatgat |
[HTIM] [IDA] [IEP] |
[7] [4] |
|||
rpoDp3 | 3212688 | rpoD | 359 | cgtggtacaaataatgctgccacccttgaaaaactgtcgatgtgggacgatatagcagatAagaatattgctgagcaaacc -35 -10 +1 |
TAGCAG | TCGATG | [CV(TA/TIM)] [HIPP] [IDA] [IEP] [IMP] [TIM] |
[48] [4] |
|
rrsAp1 | 4035239 | rrsA, ileT, alaT, rrlA, rrfA | 292 | cagaaaattattttaaatttcctcttgtcaggccggaataactccctataatgcgccaccActgacacggaacaacggcaa -35 -10 +1 |
CGCCAC | CGGAAT | [HIPP] | [49] | |
rrsAp1 | 4035239 | rrsA, ileT, alaT, rrlA, rrfA | 292 | cagaaaattattttaaatttcctcttgtcaggccggaataactccctataatgcgccaccActgacacggaacaacggcaa -35 -10 +1 |
TATAAT | TTGTCA | [HIPP] | [49] | |
rrsBp1 | 4166367 | rrsB, gltT, rrlB, rrfB | 292 | cagaaaattattttaaatttcctcttgtcaggccggaataactccctataatgcgccaccActgacacggaacaacggcaa -35 -10 +1 |
CGCCAC | CGGAAT | [HIPP] [TIM] |
[50] [51] [52] [53] [49] [54] [55] [56] |
|
rrsBp1 | 4166367 | rrsB, gltT, rrlB, rrfB | 292 | cagaaaattattttaaatttcctcttgtcaggccggaataactccctataatgcgccaccActgacacggaacaacggcaa -35 -10 +1 |
TATAAT | TTGTCA | [HIPP] [TIM] |
[50] [51] [52] [53] [49] [54] [55] [56] |
|
rrsCp1 | 3941516 | rrsC, gltU, rrlC, rrfC | 292 | cagaaaattattttaaatttcctcttgtcaggccggaataactccctataatgcgccaccActgacacggaacaacggcaa -35 -10 +1 |
CGCCAC | CGGAAT | [AIPP] [HIPP] |
[49] | |
rrsCp1 | 3941516 | rrsC, gltU, rrlC, rrfC | 292 | cagaaaattattttaaatttcctcttgtcaggccggaataactccctataatgcgccaccActgacacggaacaacggcaa -35 -10 +1 |
TATAAT | TTGTCA | [AIPP] [HIPP] |
[49] | |
rrsDp1 | 3429047 | rrfF, thrV, rrfD, rrlD, alaU, ileU, rrsD | 285 | cagaaaaaaagatcaaaaaaatacttgtgcaaaaaattgggatccctataatgcgcctccGttgagacgacaacgtgaaac -35 -10 +1 |
CCCTAT | GTGCAA | [HIPP] [TIM] |
[53] [49] [57] |
|
rrsDp1 | 3429047 | rrfF, thrV, rrfD, rrlD, alaU, ileU, rrsD | 285 | cagaaaaaaagatcaaaaaaatacttgtgcaaaaaattgggatccctataatgcgcctccGttgagacgacaacgtgaaac -35 -10 +1 |
TATAAT | TTGTGC | [HIPP] [TIM] |
[53] [49] [57] |
|
rrsEp | 4207863 | rrsE, gltV, rrlE, rrfE | 284 | agtcatttttctgcaatttttctattgcggcctgcggagaactccctataatgcgcctccAtcgacacggcggatgtgaat -35 -10 +1 |
CCCTAT | TTGCGG | [HIPP] | [49] | |
rrsEp | 4207863 | rrsE, gltV, rrlE, rrfE | 284 | agtcatttttctgcaatttttctattgcggcctgcggagaactccctataatgcgcctccAtcgacacggcggatgtgaat -35 -10 +1 |
TATAAT | TTGCGG | [HIPP] | [49] | |
rrsGp1 | 2731448 | rrfG, rrlG, gltW, rrsG | 291 | cgataaagtttttatatttttcgcttgtcaggccggaataactccctataatgcgccaccActgacacggaacaacggcaa -35 -10 +1 |
CGCCAC | CGGAAT | [HIPP] | [49] | |
rrsGp1 | 2731448 | rrfG, rrlG, gltW, rrsG | 291 | cgataaagtttttatatttttcgcttgtcaggccggaataactccctataatgcgccaccActgacacggaacaacggcaa -35 -10 +1 |
TATAAT | TTGTCA | [HIPP] | [49] | |
rrsHp1 | 223485 | rrsH, ileV, alaV, rrlH, rrfH | 286 | tgaaataaaaatgcatttttccgcttgtcttcctgagccgactccctataatgcgcctccAtcgacacggcggatgtgaat -10 +1 |
TATAAT | [HIPP] [HTIM] |
[58] [49] |
||
sdaAp | 1896809 | sdaA | 123 | ctatacttatctttacatctacaaaacactacttgagacaatcatcgcaatattagttaaAtcgcggtttttgattagttt -35 -10 +1 |
TCGCAA | ACTACT | [CV(TA/TIM)] [HIPP] [IDA] [IEP] [TIM] |
[6] [4] |
|
sltp7 | 4630700 | slt | 33 | cgtaacgtggcgtaaacggcaatgactggttagcataaatctattacgcggcatgacgctGcattgatgtatttacactta -35 -10 +1 |
CGGCAT | CTGGTTA | [ICWHO] | [3] | |
topAp1 | 1330980 | topA | 68 | tcgtgaacagagtcacgacaaggggttgatatccgcagagagcgagtccatatcggtaacTcgttgccagtggaaggttta -35 -10 +1 |
GTCCAT | TTGATA | [AIPP] [HIPP] [IMP] [TIM] |
[59] [6] [60] [61] [62] [4] |
|
trmAp | 4163295 | trmA | 25 | ctcacaaataggaattcatcaagatctggacatctgatgagcaatccctacaatcgccgcGtactttaatttttcaggata -35 -10 +1 |
CCCTAC | TGGACA | [HIPP] [TIM] |
[63] | |
xerDp | 3039851 | recJ, dsbC, xerD | 108 | ttctgccgccatttcggtgtaacaggtgctggaaccgtaaaaaagacccatattcataacGtaagcttctcgattctgctg -35 -10 +1 |
ACCCAT | TGGAAC | [HIPP] [IDA] |
[6] | |
xerDp | 3039851 | recJ, dsbC, xerD | 108 | ttctgccgccatttcggtgtaacaggtgctggaaccgtaaaaaagacccatattcataacGtaagcttctcgattctgctg -35 -10 +1 |
CATATT | GTGCTG | [HIPP] [IDA] |
[6] | |
yafDp | 231064 | yafD, yafE | 58 | gcacttgcttacataacaatatacaattgctcgttgaaagagtgagctaaaatccctataAcagtagaaccctcccgagtg -35 -10 +1 |
CCCTAT | TTGAAA | [AIPP] [CV(TA/TIM)] [IDA] [IEP] [TIM] |
[6] [4] |
|
yafUp | null | yafU | [IDA] [IEP] |
[4] | |||||
ybbNp1 | 518490 | cnoX | 211 | caaccagacgcaaagtgataaaccagtcgaaaatcccggcatcgccgcccgctttacgttGggaccggaagcggtggtgga -35 -10 +1 |
CGCCCG | TCGAAA | [AIPP] [IDA] [IEP] |
[4] [5] |
|
ybeDp | 662706 | lipB, ybeD | 64 | cactggtttggttaaaaattaaacacttgaaagtgtaatttccgtccccatatactaagcAtcagtaaaaaactcccgcct -35 -10 +1 |
CCCCAT | TTGAAA | [CV(RS-EPT-CBR/TA)] [HIPP] [IDA] [IEP] [RS-EPT-CBR] |
[6] [8] [4] |
|
ybeDp | 662706 | lipB, ybeD | 64 | cactggtttggttaaaaattaaacacttgaaagtgtaatttccgtccccatatactaagcAtcagtaaaaaactcccgcct -35 -10 +1 |
TATACT | TTGAAA | [CV(RS-EPT-CBR/TA)] [HIPP] [IDA] [IEP] [RS-EPT-CBR] |
[6] [8] [4] |
|
ybeZp | 693469 | lnt, ybeX, ybeY, ybeZ | 91 | tctcaggcctgccgttccggtgggccttgttttttctctctttatccccatctttattgcAatgcttgcgcctttttcctg -35 -10 +1 |
CCCCAT | TTGTTT | [AIPP] [CV(RS-EPT-CBR/TA)] [CV(TA/TIM)] [IDA] [IEP] [RS-EPT-CBR] [TIM] |
[6] [8] [4] |
|
ybfEp | 711939 | ybfE | 41 | gcgcgtgggcgttggcgtgactcatcgcgctgatgtattatggcgcgctatccatccgggCagaggcctggctgattgttt -35 -10 +1 |
ATCCAT | CTGATG | [AIPP] | [1] | |
yccEp | null | yccE | [IDA] [IEP] |
[4] | |||||
yceJp | 1119071 | yceI, yceJ | 25 | atcattcaatttgttatttttgtgttgcaattcattctccgacacgccattttctttctcTcgcaaattcgttttggatgc -35 -10 +1 |
CATTTT | TTGCAA | [AIPP] [IDA] |
[6] | |
yceJp | 1119071 | yceI, yceJ | 25 | atcattcaatttgttatttttgtgttgcaattcattctccgacacgccattttctttctcTcgcaaattcgttttggatgc -35 -10 +1 |
CGCCAT | TTGCAA | [AIPP] [IDA] |
[6] | |
ycjXp | 1384069 | ycjX, ycjF, tyrR | 48 | tcgccggtcgatgacaacacgggcagttgataatcaatggcctggcccccacattcatatCcttacgaatgattttttttc -35 -10 +1 |
CCCCAC | TTGATA | [AIPP] [CV(TA/TIM)] [IDA] [IEP] [TIM] |
[6] [4] |
|
ycjYp6 | 1392072 | mpaA, ymjC, ymjD, ycjY | 219 | atcccaatcgttcttctatacgacgcactatctggcttaaagctgactgcgccatgctcaGgcgggctgctgcacgagtga |
[ICWHO] | [3] | |||
ydeOp | null | ydeO | [IDA] [IEP] |
[4] | |||||
ydhQp | 1746202 | ydhQ | 75 | acaacccaataattcgtgtatcagagtttaaacagagttgtttgccaccatctcaaatctGtcgtggataaatcctccgta -35 -10 +1 |
CACCAT | TTTAAA | [AIPP] [CV(TA/TIM)] [IDA] [IEP] [TIM] |
[6] [4] |
|
yehRp | null | yehR | [IDA] [IEP] |
[4] | |||||
yfbRp3 | 2408831 | yfbR | 31 | agctgtaatcttaatttcactgccggagattgcatccggcagcgttatcccgccacaatgAcctgatgatgtcatcatacg -35 -10 +1 |
CGCCAC | ATTGCAT | [ICWHO] | [3] | |
yfjVp | null | yfjV | [IDA] [IEP] |
[4] | |||||
ygbFp | 2878915 | cas2 | 62 | gcttatagaggacgtgcttgccgctggagaaatacaaccgccggccccacctgaagatgcAcagcctgttgccattccgct -35 -10 +1 |
CCCCAC | TGGAGA | [AIPP] [TIM] |
[6] | |
yhdNp | 3439546 | zntR, yhdN | 37 | acgtaaaaaaacccgccccggcgggtttttttatacccgtagtatccccacttatctacaAtagctgtactctttttgttc -35 -10 +1 |
CCCCAC | TTTATA | [AIPP] [CV(TA/TIM)] [IDA] [IEP] [TIM] |
[6] [4] |
|
yiaAp | null | yiaA | [IDA] [IEP] |
[4] | |||||
yibAp | null | yibA | [IDA] [IEP] |
[4] | |||||
yjaZp | 4189753 | yjaZ | 33 | agatgactaatatcctgaaactgactgaactaattgagtcaaactcggcaaggattcgatActattcctgtgtaactttct -35 -10 +1 |
CGGCAA | ACTAAT | [HIPP] [TIM] |
[64] | |
yjhBp2 | 4504020 | yjhB, yjhC | 38 | actggcgtatttgaagacaatataattatttctggatattgttgaggctccctaatatttActttaagggctatattagaa -35 -10 +1 |
CCCTAA | CTGGATA | [ICWHO] | [3] | |
yjhIp | 4525888 | yjhG, yjhH, yjhI | 85 | taaatgtggctgttctggattcattattcaaagtgtgtacaagatcacatttaatcacatCattacggttcagcatgctga |
[AIBSPD] [IDA] [IEP] [IMP] |
[65] [4] |
|||
yjiTp | null | yjiT | [IDA] [IEP] |
[4] | |||||
yrdAp | null | yrdA | [IDA] [IEP] |
[4] | |||||
yrfGp | null | yrfG, hslR | [IDA] [IEP] |
[4] |
Evidence: | [AIPP] Automated inference of promoter position [ICWHO] Inferred computationally without human oversight [IDA] Inferred from direct assay [IEP] Inferred from expression pattern [CV(TA/TIM)] cross validation(TA/TIM) [TIM] Transcription initiation mapping [CV(RS-EPT-CBR/TA)] cross validation(RS-EPT-CBR/TA) [HTIM] High-throughput transcription initiation mapping [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates [HIPP] Human inference of promoter position [IC] Inferred by curator [IMP] Inferred from mutant phenotype [AIBSPD] Automated inference based on sequence pattern discovery |
Reference(s) |
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