RegulonDB RegulonDB 10.8: Sigmulon Form
   

Sigma32 Sigmulon in Escherichia coli K-12 genome




Sigma32 Signal transduction, see details.




Sigma Factor      
Name: Sigma32      Signal transduction
Synonyms: RpoH
Gene name: rpoH
Sigmulon regulators:
Sigmulon Genes:


Transcribed promoters    
  Promoter Name TSS Position Transcribed Gene(s) Distance from TSS
to gene		 Promoter Sequence Box
(-10) 		Box
(-35) 		Evidence Code(s) Reference(s)
  ackAp 2413459 ackA 11 ggtgtcatcatgcgctacgctctatggctccctgacgtttttttagccacgtatcaattaTaggtacttccatgtcgagta
                         -35                 -10            +1                    		AGCCAC TGGCTC [AIPP] [1]
[2]
  adiCp7 4337202 adiC 171 acagtacgtcgtactttatttctgtctttaaagacttctacggtatgacgccgctgcattAtgttagtcagcacagagaac
                          -35                    -10        +1                    		CGCCGC CTTTAAA [ICWHO] [3]
  alaAp9 2407408 alaA 153 aagaatcagaacaattcactatataacattgcatgtaaagcatatacacctcattattttGtcattattaagttattaaca
                            -35                  -10        +1                    		CCTCAT ATTGCAT [ICWHO] [3]
  bssSp1 1121058 bssS 103 gctgttttattgttcatataaatcttaaaagcagaaatttatctgtttccccctttaaaaAttcggtgaatacccttactt
                                -35               -10       +1                    		CCCCTT CAGAAA [AIPP]
[IDA]
[IEP] 		[4]
[5]
  bssSp2 1121032 bssS 77 aaaagcagaaatttatctgtttccccctttaaaaattcggtgaatacccttacttattggTatactgaagttgcttcagat
                            -35               -10           +1                    		ACCCTT TTTAAA [AIPP]
[CV(TA/TIM)]
[IDA]
[IEP]
[TIM] 		[6]
[4]
[5]
  canp 142703 can 33 ttacgttcttacactttatctgtggtttaaatcgtcccggagttgccctatattagccaaAcgtaattatttggttacagg
 		    [AIPP]
[CV(RS-EPT-CBR/TA)]
[HTIM]
[IDA]
[RS-EPT-CBR] 		[7]
[6]
[8]
  casDp null cas2, cas1, casE, casD       [IDA]
[IEP] 		[4]
  clpBp 2734205 clpB 32 ttttcacattaatctggtcaataaccttgaataattgagggatgacctcatttaatctccAgtagcaactttgatccgtta
                           -35                -10           +1                    		CCTCAT TTGAAT [AIPP]
[CV(RS-EPT-CBR/TA)]
[CV(TA/TIM)]
[HIPP]
[IDA]
[IEP]
[RS-EPT-CBR]
[TIM] 		[9]
[6]
[8]
[10]
[4]
  clpBp 2734205 clpB 32 ttttcacattaatctggtcaataaccttgaataattgagggatgacctcatttaatctccAgtagcaactttgatccgtta
                           -35                       -10    +1                    		TAATCT TTGAAT [AIPP]
[CV(RS-EPT-CBR/TA)]
[CV(TA/TIM)]
[HIPP]
[IDA]
[IEP]
[RS-EPT-CBR]
[TIM] 		[9]
[6]
[8]
[10]
[4]
  clpPp3 456605 clpP, clpX 72 gcgtaacaacaaaagattgttatgcttgaaatatggtgatgccgtacccataacacagggActagctgataatccgtccat
                          -35                 -10           +1                    		ACCCAT TTGAAA [CV(RS-EPT-CBR/TA)]
[CV(TA/TIM)]
[IDA]
[IEP]
[RS-EPT-CBR]
[TIM] 		[11]
[6]
[8]
[4]
  creAp2 4635243 creA, creB, creC 278 ttaaacattctctgtaagtgccacttggaataacctgctttcgccgctacattgtcgagcGacaggggctgatccagatga
                         -35                 -10            +1                    		CGCTAC TTGGAA [HIPP]
[TIM] 		[6]
  dnaKp1 12048 dnaK, tpke11, dnaJ 115 gcacaaaaaatttttgcatctcccccttgatgacgtggtttacgaccccatttagtagtcAaccgcagtgagtgagtctgc
                           -35                -10           +1                    		CCCCAT TTGATG [CV(RS-EPT-CBR/TA)]
[CV(TA/TIM)]
[HIPP]
[IDA]
[IEP]
[RS-EPT-CBR]
[TIM] 		[12]
[6]
[8]
[4]
[13]
[14]
  dnaKp2 12123 dnaK, tpke11, dnaJ 40 gtctgcaaaaaaatgaaattgggcagttgaaaccagacgtttcgcccctattacagactcAcaaccacatgatgaccgaat
                           -35                -10           +1                    		CCCTAT TTGAAA [CV(TA/TIM)]
[HIPP]
[IDA]
[IEP]
[TIM] 		[12]
[6]
[4]
[13]
[14]
  dnaKp3 12144 dnaK, tpke11, dnaJ 19 ggcagttgaaaccagacgtttcgcccctattacagactcacaaccacatgatgaccgaatAtatagtggagacgtttagat
                          -35               -10             +1                    		CCACAT CCTATT [CV(TA/TIM)]
[HIPP]
[IDA]
[IEP]
[TIM] 		[12]
[4]
[13]
[14]
  fruRp8 87947 cra 81 cgttgggctttttttgcgaaatcagtgggaacctggaataaaagcagttgccgcagttaaTtttctgcgcttagatgttaa
                                 -35               -10      +1                    		CCGCAG CTGGAAT [ICWHO] [3]
  fxsAp 4368603 fxsA 61 ctaccaaaaatagttgcgcaaacatcttgaaattttgctaatgaccacaatataagctaaAcgcgattcgcaacccattca
                           -35               -10            +1                    		CCACAA TTGAAA [AIPP]
[CV(TA/TIM)]
[HIPP]
[IDA]
[IEP]
[TIM] 		[6]
[4]
[15]
  gapAp2 1862618 gapA, yeaD 153 atcacatttttatcgtaattgccctttaaaattcggggcgccgaccccatgtggtctcaaGcccaaaggaagagtgaggcg
                         -35                 -10            +1                    		CCCCAT TTTAAA [AIPP]
[CV(TA/TIM)]
[HIPP]
[IDA]
[TIM] 		[16]
[17]
[6]
[18]
[4]
  glnSp2 705999 glnS 94 aagcggtggagatcttctctgccgctttttttttcatcaatcatccccataatccttgttAgattatcaattttaaaaaac
                          -35                   -10         +1                    		CATAAT TTTTTT [IDA] [6]
  glnSp2 705999 glnS 94 aagcggtggagatcttctctgccgctttttttttcatcaatcatccccataatccttgttAgattatcaattttaaaaaac
                          -35                -10            +1                    		CCCCAT TTTTTT [IDA] [6]
  groSp 4370616 groS, groL 72 cagaattttttttctttttcccccttgaaggggcgaagcctcatccccatttctctggtcAccagccgggaaaccacgtaa
                         -35                    -10         +1                    		CATTTC TTGAAG [AIPP]
[CV(RS-EPT-CBR/TA)]
[HIPP]
[IDA]
[IEP]
[RS-EPT-CBR] 		[12]
[6]
[8]
[4]
[13]
[19]
[20]
  groSp 4370616 groS, groL 72 cagaattttttttctttttcccccttgaaggggcgaagcctcatccccatttctctggtcAccagccgggaaaccacgtaa
                         -35                 -10            +1                    		CCCCAT TTGAAG [AIPP]
[CV(RS-EPT-CBR/TA)]
[HIPP]
[IDA]
[IEP]
[RS-EPT-CBR] 		[12]
[6]
[8]
[4]
[13]
[19]
[20]
  grpEp 2750747 grpE 39 gattgatgacaatgtgagtgcttcccttgaaaccctgaaactgatccccataataagcgaAgttagcgagatgaatgcgaa
                           -35                -10           +1                    		CCCCAT TTGAAA [AIPP]
[CV(RS-EPT-CBR/TA)]
[CV(TA/TIM)]
[HIPP]
[IDA]
[IEP]
[RS-EPT-CBR]
[TIM] 		[21]
[6]
[8]
[4]
  hepAp2 63588 rapA 324 agaaaaccaaaagcgtggtcgccccttgcaatatcagaatcgcggcaccattaagtacgtAtggaccaccaacggcccgga
                         -35                  -10           +1                    		CACCAT CTTGCA [CV(RS-EPT-CBR/TA)]
[CV(TA/TIM)]
[HIPP]
[IDA]
[IEP]
[RS-EPT-CBR]
[TIM] 		[6]
[8]
[4]
  hepAp2 63588 rapA 324 agaaaaccaaaagcgtggtcgccccttgcaatatcagaatcgcggcaccattaagtacgtAtggaccaccaacggcccgga
                          -35                 -10           +1                    		CACCAT TTGCAA [CV(RS-EPT-CBR/TA)]
[CV(TA/TIM)]
[HIPP]
[IDA]
[IEP]
[RS-EPT-CBR]
[TIM] 		[6]
[8]
[4]
  hfqp1 null hfq, hflX, hflK, hflC       [CV(TA/TIM)]
[HIPP]
[IDA]
[IEP]
[TIM] 		[22]
  holCp 4484273 valS, holC -7 cgctgcggtgtatacctgatgcgtatttaaatccaccacaagaagccccatttatgaaaaAcgcgacgttctaccttctgg
                          -35                 -10           +1                    		CCCCAT TTTAAA [AIPP]
[CV(TA/TIM)]
[IDA]
[IEP]
[TIM] 		[6]
[4]
  hslRp 3529110 hslR, hslO 238 gagcataccggtctggacgcacaccttgatttattactttccacccacacatttggttatCcgaaagaggatcagcggtta
                          -35              -10              +1                    		ACCCAC TTGATT [AIPP]
[TIM] 		[6]
  hslVp 4122354 hslU, hslV 67 atacaaactgcattcggctcgccgccgggggttgaaaccctcaaaatcccccccatctatAattgcattatgccccgtact
                                -35                -10      +1                    		CCCCAT TTGAAA [AIPP]
[CV(TA/TIM)]
[HIPP]
[IDA]
[IEP]
[TIM] 		[23]
[6]
[4]
[13]
  hspQp null hspQ       [IDA]
[IEP] 		[4]
  htgAp1 10644 mbiA 186 gtggggcagtgtctacgatcttttgaggggaaaatgaaaattttccccggtttccggtatCagacctgagtggcgctaacc
 		    [HIPP]
[TIM] 		[24]
[25]
  htpGp1 495075 htpG 45 acgagagcaggatcacctgctctcgcttgaaattattctcccttgtccccatctctcccaCatcctgtttttaaccttaaa
                           -35                 -10          +1                    		CCCCAT TTGAAA [AIPP]
[CV(TA/TIM)]
[HIPP]
[IDA]
[IEP]
[TIM] 		[26]
[12]
[6]
[4]
[14]
  htpGp2 495084 htpG 36 ggatcacctgctctcgcttgaaattattctcccttgtccccatctctcccacatcctgttTttaaccttaaaatggcatta
                                 -35             -10        +1                    		CCACAT CTTGTC [AIPP]
[CV(TA/TIM)]
[HIPP]
[IDA]
[IEP]
[TIM] 		[12]
[6]
[4]
[14]
  htpXp 1912618 htpX 42 tctggtgacttacgcactatccagacttgaaaatagtcgcgtaacccatacgatgtgggtAtcgcatattgcgttttgtta
                           -35              -10             +1                    		ACCCAT TTGAAA [AIPP]
[CV(RS-EPT-CBR/TA)]
[CV(TA/TIM)]
[HIPP]
[IDA]
[IEP]
[RS-EPT-CBR]
[TIM] 		[27]
[6]
[8]
[4]
  ibpAp 3867518 ibpB, ibpA 96 tgcaaaaaaaagtccgctgataaggcttgaaaagttcatttccagacccatttttacatcGtagccgatgaggacgcgcct
                           -35                -10           +1                    		ACCCAT TTGAAA [AIPP]
[CV(TA/TIM)]
[HIPP]
[IDA]
[IEP]
[TIM] 		[28]
[23]
[29]
[30]
[6]
[4]
  ileSp3 22229 ileS, lspA, fkpB, ispH 162 cagctggaagtgcatttgttagatgttgcaatggacctttacggtcgccatatacaagtaGtgctgcgtaaaaaaatacgc
                          -35                 -10           +1                    		CGCCAT TTGCAA [AIPP]
[CV(RS-EPT-CBR/TA)]
[CV(TA/TIM)]
[RS-EPT-CBR]
[TIM] 		[6]
[8]
  lapAp1 1340135 lapA, lapB, pyrF, yciH 108 aacgagaacaagaaagttaacgctggttgattttccgaatttagcccttaaatcatcaacAatgcgtgtggatgccatttc
                           -35                     -10      +1                    		AATCAT TTGATT [AIPP]
[CV(TA/TIM)]
[IDA]
[IEP]
[TIM] 		[31]
[6]
[4]
  lapAp1 1340135 lapA, lapB, pyrF, yciH 108 aacgagaacaagaaagttaacgctggttgattttccgaatttagcccttaaatcatcaacAatgcgtgtggatgccatttc
                          -35               -10             +1                    		GCCCTT GTTGATT [AIPP]
[CV(TA/TIM)]
[IDA]
[IEP]
[TIM] 		[31]
[6]
[4]
  ldhAp 1442915 ldhA 72 gaaggttgcgcctacactaagcatagttgttgatgaatttttcaatatcgccatagctttCaattaaatttgaaattttgt
                              -35                -10        +1                    		CGCCAT TTGATG [AIPP]
[IDA]
[IEP] 		[32]
[4]
[5]
  lonp 458815 lon 73 taatttttcctctattctcggcgttgaatgtgggggaaacatccccatatactgacgtacAtgttaatagatggcgtgaag
                        -35                -10              +1                    		CCCCAT TTGAAT [CV(RS-EPT-CBR/TA)]
[HIPP]
[IDA]
[IEP]
[RS-EPT-CBR] 		[33]
[6]
[8]
[4]
  lonp 458815 lon 73 taatttttcctctattctcggcgttgaatgtgggggaaacatccccatatactgacgtacAtgttaatagatggcgtgaag
                        -35                     -10         +1                    		TATACT TTGAAT [CV(RS-EPT-CBR/TA)]
[HIPP]
[IDA]
[IEP]
[RS-EPT-CBR] 		[33]
[6]
[8]
[4]
  metAp1 4214233 metA 47 aactttctcaccttcaacatgcaggctcgacattggcaaattttctggttatcttcagctAtctggatgtctaaacgtata
                                  -35                -10    +1                    		CTTCAG TGGCAA [CV(RS-EPT-CBR/TA)]
[CV(TA/TIM)]
[RS-EPT-CBR]
[TIM] 		[34]
[35]
[8]
  mhpTp 375386 mhpT 73 acacgactgccggatgcgataaacgtcttgtccggcctacatttcgcccgtaggcagtcaTtaaatagttctgattacgcg
                            -35              -10            +1                    		CGCCCG TTGTCC [AIPP] [1]
  miaAp2 4398982 miaA, hfq, hflX, hflK, hflC 270 agtctgccctggcggaattgggtattgatttccagtcagatgcacagcatgtgaccatcaGggcagtgcctttacccttac
                         -35                 -10            +1                    		CAGCAT TTGATT [CV(TA/TIM)]
[HIPP]
[IDA]
[IEP]
[TIM] 		[22]
  mlcp2 1668591 ynfK, mlc 27 cctaagtaaaaatttgacgacacgtattgaagtgcttcaccatagcctacagattatttcGgagcgcgaaaatatagggag
                           -35                 -10          +1                    		CTACAG TTGAAG [AIPP]
[TIM] 		[36]
[6]
[37]
  mlcp2 1668591 ynfK, mlc 27 cctaagtaaaaatttgacgacacgtattgaagtgcttcaccatagcctacagattatttcGgagcgcgaaaatatagggag
                           -35                      -10     +1                    		GATTAT TTGAAG [AIPP]
[TIM] 		[36]
[6]
[37]
  mngAp 765811 mngA, mngB 173 ctgacgccaaactctgtttgtagcgctgattcagtgggtaacgcatcgccaggtttaagcTcgccacgcgcaatttgttca
                              -35              -10          +1                    		CGCCAG TTCAGT [HIPP]
[IC] 		[1]
[38]
  mutLp2 4397046 mutL, miaA, hfq, hflX, hflK, hflC 366 ctgctgggtggggcgggtgatgtgctggcgaacagtcagtctgacccctatttaagccagGcggtgctggatttacagttc
                          -35                 -10           +1                    		CCCTAT TGGCGA [CV(TA/TIM)]
[HIPP]
[IDA]
[IEP]
[TIM] 		[22]
  mutMp 3811175 mutM 23 taacaaaaaacctcgctccggcggggttttttgttatctgcttgcccccatattgactgcAtctgttcattcctggagatg
                           -35                -10           +1                    		CCCCAT TTTTTT [AIPP]
[TIM] 		[39]
[6]
[5]
  narPp 2290422 narP 78 atgatgccaaagcgaacgacaaggttgtagttttcactacatgtccatacataaaatgggGtaacattcacgcgcctggta
                         -35               -10              +1                    		GTCCAT TTGTAG [AIPP]
[CV(TA/TIM)]
[IDA]
[IEP]
[TIM] 		[6]
[4]
  nfuAp2 3545458 nfuA 166 cgcaacctgaaaaatgcctttcgtcttgaattgcccgtgcaaggtcgccatatggtgattGtggatgatgtcgttaccacc
                          -35                 -10           +1                    		CGCCAT TTGAAT [AIPP]
[CV(RS-EPT-CBR/TA)]
[CV(TA/TIM)]
[RS-EPT-CBR]
[TIM] 		[6]
[8]
  osmFp2 null yehW, yehX, yehY, osmF       [IDA]
[IEP] 		[4]
  pgpCp 2698638 tadA, pgpC 88 tttatattccattgccgctaattgccatgaattaaaaattccagttagccatgatgcggtCgattgttgccggaaaagtga
                           -35                 -10          +1                    		AGCCAT ATGAAT [AIPP] [7]
  phoPp3 1190491 phoQ, phoP 44 tttttcactttacctcccctccccgctggtttatttaatgtttacccccataaccacataAtcgcgttacactattttaat
                              -35             -10           +1                    		CCCCAT TTTATT [AIPP]
[CV(TA/TIM)]
[IDA]
[IEP]
[TIM] 		[6]
[4]
  pncCp 2824394 pncC 48 taatcagcttttttctgaatcctcctcgtaaaattgcaacgccaacaccatcttcctgacGaaagtgctatcttgtccggc
                          -35                 -10           +1                    		CACCAT TCGTAA [HIPP]
[TIM] 		[6]
  pphAp 1923385 pphA, sdsR 178 attcagattgatgatcctaacaatcccggcgaaaaaatgagtctggcaccgtttatagaaCgagctgaaaaactctgttaa
                             -35               -10          +1                    		CACCGT GCGAAA [AIPP]
[TIM] 		[40]
  ppiDp1 461838 ppiD 77 cttttttatttgtattcggtgactttctgcgtcttgtgggctgacaattgcccccgtttcTtgtcacaataggcctttgcg
                                  -35               -10     +1                    		CCCCGT TTGTGG [HIPP]
[TIM] 		[41]
  prlCp 3645238 rsmJ, prlC 56 cgccgcgaaagcgtaacgtttctcattgaaattcactacacttaaccccatgctacacacAttatgtaaagcgcctgttga
                          -35                 -10           +1                    		CCCCAT TTGAAA [AIPP]
[CV(RS-EPT-CBR/TA)]
[IDA]
[IEP]
[RS-EPT-CBR] 		[6]
[8]
[4]
  ptsHp4 2533501 ptsH, ptsI, crr 263 tcaaactttcgcccctcctggcattgattcagcctgtcggaactggtatttaaccagactAattattttgatgcgcgaaat
                        -35                    -10          +1                    		TATTTA TTGATT [CV(RS-EPT-CBR/TA)]
[CV(TA/TIM)]
[HIPP]
[RS-EPT-CBR]
[TIM] 		[42]
[43]
[44]
[8]
  ptsHp4 2533501 ptsH, ptsI, crr 263 tcaaactttcgcccctcctggcattgattcagcctgtcggaactggtatttaaccagactAattattttgatgcgcgaaat
                -35                         -10             +1                    		TGGTATTTA TCCTGGCATTGAT [CV(RS-EPT-CBR/TA)]
[CV(TA/TIM)]
[HIPP]
[RS-EPT-CBR]
[TIM] 		[42]
[43]
[44]
[8]
  ptsHp5 2533498 ptsH, ptsI, crr 266 gcttcaaactttcgcccctcctggcattgattcagcctgtcggaactggtatttaaccagActaattattttgatgcgcga
 		    [TIM] [45]
[44]
  raiAp 2737104 raiA 50 aaaagattcgttgacaaaaagtgacaaaattatgagattttcatcacacattttgacatcAggaacggtatgctgaattca
 		    [IDA]
[IEP] 		[4]
  rdgBp 3096620 rdgB, hemW 61 cgggttgccaaaagccaggtggtgattgaaaaaggcgaacttggccgccacaaacaaattAaaatcattaatccgcaacaa
                          -35                 -10           +1                    		CGCCAC TTGAAA [AIPP]
[TIM] 		[6]
  rfaDp3 3793865 rfaD, waaF, waaC, waaL 122 gcactattcacatgcaaaaccaacatccgccatgaaggactagctaaaacccaaactagtTtgttgcaattagcatccttg
                                -35              -10        +1                    		ACCCAA ATGAAG [TIM] [46]
  ribEp 434504 ribE, nusB, thiL, pgpA 143 ccgcggattatgcacgctgccagggcttgagaaattagccgacgccccccaatttaaattCaaagagatacgtcatgtagg
                           -35                 -10          +1                    		CCCCAA TTGAGA [AIPP]
[CV(RS-EPT-CBR/TA)]
[CV(TA/TIM)]
[RS-EPT-CBR]
[TIM] 		[6]
[8]
  rlmEp2 3327731 ftsH, rlmE 67 atcgtattttttgcttacgttgggattgaaaacgggtcattctaccgccatctcccatatAtcaccaaataggcgcgtaaa
                          -35                 -10           +1                    		CGCCAT TTGAAA [AIPP]
[CV(TA/TIM)]
[HIPP]
[IDA]
[IEP]
[TIM] 		[47]
[6]
[4]
  rnlAp 2765906 rnlA 12 tttagcaaatcaatacacttcaggggggtattattgtagagtttccccatatgtttctatGggatccaggaaatgacaatc
                          -35                -10            +1                    		CCCCAT GGGTAT [AIPP]
[IDA] 		[6]
  rpmEp 4126908 rpmE 105 cacattgccgtagaagagtgcggatcagtttgcatacgctggttaatttctgtatgatttCgcgccttcgtacgaaatgat
 		    [HTIM]
[IDA]
[IEP] 		[7]
[4]
  rpoDp3 3212688 rpoD 359 cgtggtacaaataatgctgccacccttgaaaaactgtcgatgtgggacgatatagcagatAagaatattgctgagcaaacc
                                     -35             -10    +1                    		TAGCAG TCGATG [CV(TA/TIM)]
[HIPP]
[IDA]
[IEP]
[IMP]
[TIM] 		[48]
[4]
  rrsAp1 4035239 rrsA, ileT, alaT, rrlA, rrfA 292 cagaaaattattttaaatttcctcttgtcaggccggaataactccctataatgcgccaccActgacacggaacaacggcaa
                                  -35                 -10   +1                    		CGCCAC CGGAAT [HIPP] [49]
  rrsAp1 4035239 rrsA, ileT, alaT, rrlA, rrfA 292 cagaaaattattttaaatttcctcttgtcaggccggaataactccctataatgcgccaccActgacacggaacaacggcaa
                         -35                   -10          +1                    		TATAAT TTGTCA [HIPP] [49]
  rrsBp1 4166367 rrsB, gltT, rrlB, rrfB 292 cagaaaattattttaaatttcctcttgtcaggccggaataactccctataatgcgccaccActgacacggaacaacggcaa
                                  -35                 -10   +1                    		CGCCAC CGGAAT [HIPP]
[TIM] 		[50]
[51]
[52]
[53]
[49]
[54]
[55]
[56]
  rrsBp1 4166367 rrsB, gltT, rrlB, rrfB 292 cagaaaattattttaaatttcctcttgtcaggccggaataactccctataatgcgccaccActgacacggaacaacggcaa
                         -35                   -10          +1                    		TATAAT TTGTCA [HIPP]
[TIM] 		[50]
[51]
[52]
[53]
[49]
[54]
[55]
[56]
  rrsCp1 3941516 rrsC, gltU, rrlC, rrfC 292 cagaaaattattttaaatttcctcttgtcaggccggaataactccctataatgcgccaccActgacacggaacaacggcaa
                                  -35                 -10   +1                    		CGCCAC CGGAAT [AIPP]
[HIPP] 		[49]
  rrsCp1 3941516 rrsC, gltU, rrlC, rrfC 292 cagaaaattattttaaatttcctcttgtcaggccggaataactccctataatgcgccaccActgacacggaacaacggcaa
                         -35                   -10          +1                    		TATAAT TTGTCA [AIPP]
[HIPP] 		[49]
  rrsDp1 3429047 rrfF, thrV, rrfD, rrlD, alaU, ileU, rrsD 285 cagaaaaaaagatcaaaaaaatacttgtgcaaaaaattgggatccctataatgcgcctccGttgagacgacaacgtgaaac
                           -35              -10             +1                    		CCCTAT GTGCAA [HIPP]
[TIM] 		[53]
[49]
[57]
  rrsDp1 3429047 rrfF, thrV, rrfD, rrlD, alaU, ileU, rrsD 285 cagaaaaaaagatcaaaaaaatacttgtgcaaaaaattgggatccctataatgcgcctccGttgagacgacaacgtgaaac
                         -35                   -10          +1                    		TATAAT TTGTGC [HIPP]
[TIM] 		[53]
[49]
[57]
  rrsEp 4207863 rrsE, gltV, rrlE, rrfE 284 agtcatttttctgcaatttttctattgcggcctgcggagaactccctataatgcgcctccAtcgacacggcggatgtgaat
                         -35                -10             +1                    		CCCTAT TTGCGG [HIPP] [49]
  rrsEp 4207863 rrsE, gltV, rrlE, rrfE 284 agtcatttttctgcaatttttctattgcggcctgcggagaactccctataatgcgcctccAtcgacacggcggatgtgaat
                         -35                   -10          +1                    		TATAAT TTGCGG [HIPP] [49]
  rrsGp1 2731448 rrfG, rrlG, gltW, rrsG 291 cgataaagtttttatatttttcgcttgtcaggccggaataactccctataatgcgccaccActgacacggaacaacggcaa
                                  -35                 -10   +1                    		CGCCAC CGGAAT [HIPP] [49]
  rrsGp1 2731448 rrfG, rrlG, gltW, rrsG 291 cgataaagtttttatatttttcgcttgtcaggccggaataactccctataatgcgccaccActgacacggaacaacggcaa
                         -35                   -10          +1                    		TATAAT TTGTCA [HIPP] [49]
  rrsHp1 223485 rrsH, ileV, alaV, rrlH, rrfH 286 tgaaataaaaatgcatttttccgcttgtcttcctgagccgactccctataatgcgcctccAtcgacacggcggatgtgaat
                                               -10          +1                    		TATAAT   [HIPP]
[HTIM] 		[58]
[49]
  sdaAp 1896809 sdaA 123 ctatacttatctttacatctacaaaacactacttgagacaatcatcgcaatattagttaaAtcgcggtttttgattagttt
                            -35              -10            +1                    		TCGCAA ACTACT [CV(TA/TIM)]
[HIPP]
[IDA]
[IEP]
[TIM] 		[6]
[4]
  sltp7 4630700 slt 33 cgtaacgtggcgtaaacggcaatgactggttagcataaatctattacgcggcatgacgctGcattgatgtatttacactta
                          -35                    -10        +1                    		CGGCAT CTGGTTA [ICWHO] [3]
  topAp1 1330980 topA 68 tcgtgaacagagtcacgacaaggggttgatatccgcagagagcgagtccatatcggtaacTcgttgccagtggaaggttta
                          -35                 -10           +1                    		GTCCAT TTGATA [AIPP]
[HIPP]
[IMP]
[TIM] 		[59]
[6]
[60]
[61]
[62]
[4]
  trmAp 4163295 trmA 25 ctcacaaataggaattcatcaagatctggacatctgatgagcaatccctacaatcgccgcGtactttaatttttcaggata
                           -35                -10           +1                    		CCCTAC TGGACA [HIPP]
[TIM] 		[63]
  xerDp 3039851 recJ, dsbC, xerD 108 ttctgccgccatttcggtgtaacaggtgctggaaccgtaaaaaagacccatattcataacGtaagcttctcgattctgctg
                              -35             -10           +1                    		ACCCAT TGGAAC [HIPP]
[IDA] 		[6]
  xerDp 3039851 recJ, dsbC, xerD 108 ttctgccgccatttcggtgtaacaggtgctggaaccgtaaaaaagacccatattcataacGtaagcttctcgattctgctg
                          -35                    -10        +1                    		CATATT GTGCTG [HIPP]
[IDA] 		[6]
  yafDp 231064 yafD, yafE 58 gcacttgcttacataacaatatacaattgctcgttgaaagagtgagctaaaatccctataAcagtagaaccctcccgagtg
                                  -35                 -10   +1                    		CCCTAT TTGAAA [AIPP]
[CV(TA/TIM)]
[IDA]
[IEP]
[TIM] 		[6]
[4]
  yafUp null yafU       [IDA]
[IEP] 		[4]
  ybbNp1 518490 cnoX 211 caaccagacgcaaagtgataaaccagtcgaaaatcccggcatcgccgcccgctttacgttGggaccggaagcggtggtgga
                           -35                -10           +1                    		CGCCCG TCGAAA [AIPP]
[IDA]
[IEP] 		[4]
[5]
  ybeDp 662706 lipB, ybeD 64 cactggtttggttaaaaattaaacacttgaaagtgtaatttccgtccccatatactaagcAtcagtaaaaaactcccgcct
                           -35                -10           +1                    		CCCCAT TTGAAA [CV(RS-EPT-CBR/TA)]
[HIPP]
[IDA]
[IEP]
[RS-EPT-CBR] 		[6]
[8]
[4]
  ybeDp 662706 lipB, ybeD 64 cactggtttggttaaaaattaaacacttgaaagtgtaatttccgtccccatatactaagcAtcagtaaaaaactcccgcct
                           -35                     -10      +1                    		TATACT TTGAAA [CV(RS-EPT-CBR/TA)]
[HIPP]
[IDA]
[IEP]
[RS-EPT-CBR] 		[6]
[8]
[4]
  ybeZp 693469 lnt, ybeX, ybeY, ybeZ 91 tctcaggcctgccgttccggtgggccttgttttttctctctttatccccatctttattgcAatgcttgcgcctttttcctg
                           -35                -10           +1                    		CCCCAT TTGTTT [AIPP]
[CV(RS-EPT-CBR/TA)]
[CV(TA/TIM)]
[IDA]
[IEP]
[RS-EPT-CBR]
[TIM] 		[6]
[8]
[4]
  ybfEp 711939 ybfE 41 gcgcgtgggcgttggcgtgactcatcgcgctgatgtattatggcgcgctatccatccgggCagaggcctggctgattgttt
                              -35                 -10       +1                    		ATCCAT CTGATG [AIPP] [1]
  yccEp null yccE       [IDA]
[IEP] 		[4]
  yceJp 1119071 yceI, yceJ 25 atcattcaatttgttatttttgtgttgcaattcattctccgacacgccattttctttctcTcgcaaattcgttttggatgc
                         -35                    -10         +1                    		CATTTT TTGCAA [AIPP]
[IDA] 		[6]
  yceJp 1119071 yceI, yceJ 25 atcattcaatttgttatttttgtgttgcaattcattctccgacacgccattttctttctcTcgcaaattcgttttggatgc
                         -35                 -10            +1                    		CGCCAT TTGCAA [AIPP]
[IDA] 		[6]
  ycjXp 1384069 ycjX, ycjF, tyrR 48 tcgccggtcgatgacaacacgggcagttgataatcaatggcctggcccccacattcatatCcttacgaatgattttttttc
                           -35                 -10          +1                    		CCCCAC TTGATA [AIPP]
[CV(TA/TIM)]
[IDA]
[IEP]
[TIM] 		[6]
[4]
  ycjYp6 1392072 mpaA, ymjC, ymjD, ycjY 219 atcccaatcgttcttctatacgacgcactatctggcttaaagctgactgcgccatgctcaGgcgggctgctgcacgagtga
 		    [ICWHO] [3]
  ydeOp null ydeO       [IDA]
[IEP] 		[4]
  ydhQp 1746202 ydhQ 75 acaacccaataattcgtgtatcagagtttaaacagagttgtttgccaccatctcaaatctGtcgtggataaatcctccgta
                           -35                -10           +1                    		CACCAT TTTAAA [AIPP]
[CV(TA/TIM)]
[IDA]
[IEP]
[TIM] 		[6]
[4]
  yehRp null yehR       [IDA]
[IEP] 		[4]
  yfbRp3 2408831 yfbR 31 agctgtaatcttaatttcactgccggagattgcatccggcagcgttatcccgccacaatgAcctgatgatgtcatcatacg
                             -35                   -10      +1                    		CGCCAC ATTGCAT [ICWHO] [3]
  yfjVp null yfjV       [IDA]
[IEP] 		[4]
  ygbFp 2878915 cas2 62 gcttatagaggacgtgcttgccgctggagaaatacaaccgccggccccacctgaagatgcAcagcctgttgccattccgct
                         -35                 -10            +1                    		CCCCAC TGGAGA [AIPP]
[TIM] 		[6]
  yhdNp 3439546 zntR, yhdN 37 acgtaaaaaaacccgccccggcgggtttttttatacccgtagtatccccacttatctacaAtagctgtactctttttgttc
                              -35             -10           +1                    		CCCCAC TTTATA [AIPP]
[CV(TA/TIM)]
[IDA]
[IEP]
[TIM] 		[6]
[4]
  yiaAp null yiaA       [IDA]
[IEP] 		[4]
  yibAp null yibA       [IDA]
[IEP] 		[4]
  yjaZp 4189753 yjaZ 33 agatgactaatatcctgaaactgactgaactaattgagtcaaactcggcaaggattcgatActattcctgtgtaactttct
                             -35              -10           +1                    		CGGCAA ACTAAT [HIPP]
[TIM] 		[64]
  yjhBp2 4504020 yjhB, yjhC 38 actggcgtatttgaagacaatataattatttctggatattgttgaggctccctaatatttActttaagggctatattagaa
                                -35               -10       +1                    		CCCTAA CTGGATA [ICWHO] [3]
  yjhIp 4525888 yjhG, yjhH, yjhI 85 taaatgtggctgttctggattcattattcaaagtgtgtacaagatcacatttaatcacatCattacggttcagcatgctga
 		    [AIBSPD]
[IDA]
[IEP]
[IMP] 		[65]
[4]
  yjiTp null yjiT       [IDA]
[IEP] 		[4]
  yrdAp null yrdA       [IDA]
[IEP] 		[4]
  yrfGp null yrfG, hslR       [IDA]
[IEP] 		[4]
Evidence: [AIPP] Automated inference of promoter position
[ICWHO] Inferred computationally without human oversight
[IDA] Inferred from direct assay
[IEP] Inferred from expression pattern
[CV(TA/TIM)] cross validation(TA/TIM)
[TIM] Transcription initiation mapping
[CV(RS-EPT-CBR/TA)] cross validation(RS-EPT-CBR/TA)
[HTIM] High-throughput transcription initiation mapping
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates
[HIPP] Human inference of promoter position
[IC] Inferred by curator
[IMP] Inferred from mutant phenotype
[AIBSPD] Automated inference based on sequence pattern discovery


Reference(s)    

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 [39] Gifford CM., Wallace SS., 1999, The genes encoding formamidopyrimidine and MutY DNA glycosylases in Escherichia coli are transcribed as part of complex operons., J Bacteriol 181(14):4223-36

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 [41] Dartigalongue C., Raina S., 1998, A new heat-shock gene, ppiD, encodes a peptidyl-prolyl isomerase required for folding of outer membrane proteins in Escherichia coli., EMBO J 17(14):3968-80

 [42] Plumbridge J., 1999, Expression of the phosphotransferase system both mediates and is mediated by Mlc regulation in Escherichia coli., Mol Microbiol 33(2):260-73

 [43] Ryu S., Garges S., 1994, Promoter switch in the Escherichia coli pts operon., J Biol Chem 269(7):4767-72

 [44] Ryu S., Ramseier TM., Michotey V., Saier MH., Garges S., 1995, Effect of the FruR regulator on transcription of the pts operon in Escherichia coli., J Biol Chem 270(6):2489-96

 [45] De Reuse H., Danchin A., 1988, The ptsH, ptsI, and crr genes of the Escherichia coli phosphoenolpyruvate-dependent phosphotransferase system: a complex operon with several modes of transcription., J Bacteriol 170(9):3827-37

 [46] Raina S., Georgopoulos C., 1991, The htrM gene, whose product is essential for Escherichia coli viability only at elevated temperatures, is identical to the rfaD gene., Nucleic Acids Res 19(14):3811-9

 [47] Herman C., Thevenet D., D'Ari R., Bouloc P., 1995, Degradation of sigma 32, the heat shock regulator in Escherichia coli, is governed by HflB., Proc Natl Acad Sci U S A 92(8):3516-20

 [48] Taylor WE., Straus DB., Grossman AD., Burton ZF., Gross CA., Burgess RR., 1984, Transcription from a heat-inducible promoter causes heat shock regulation of the sigma subunit of E. coli RNA polymerase., Cell 38(2):371-81

 [49] Newlands JT., Gaal T., Mecsas J., Gourse RL., 1993, Transcription of the Escherichia coli rrnB P1 promoter by the heat shock RNA polymerase (E sigma 32) in vitro., J Bacteriol 175(3):661-8

 [50] Bartlett MS., Gaal T., Ross W., Gourse RL., 2000, Regulation of rRNA transcription is remarkably robust: FIS compensates for altered nucleoside triphosphate sensing by mutant RNA polymerases at Escherichia coli rrn P1 promoters., J Bacteriol 182(7):1969-77

 [51] Bartlett MS., Gourse RL., 1994, Growth rate-dependent control of the rrnB P1 core promoter in Escherichia coli., J Bacteriol 176(17):5560-4

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