RegulonDB RegulonDB 10.7: Sigmulon Form
   

Sigma38 Sigmulon in Escherichia coli K-12 genome




Sigma38 Signal transduction, see details.




Sigma Factor      
Name: Sigma38      Signal transduction
Synonyms: RpoS
Gene name: rpoS
Sigmulon regulators:
Sigmulon Genes:


Transcribed promoters    
  Promoter Name TSS Position Transcribed Gene(s) Distance from TSS
to gene
Promoter Sequence Box
(-10)
Box
(-35)
Evidence Code(s) Reference(s)
  aceEp 122969 aceE, aceF 48 aaagcgcggcaactaaacgtagaacctgtcttattgagctttccggcgagagttcaatggGacaggttccagaaaactcaa
                          -35              -10              +1                   
CCGGCGAGAGT CTGTCT [HTIM]
[RS-EPT-CBR]
[TIM]
[1]
[2]
[3]
  aceEp 122969 aceE, aceF 48 aaagcgcggcaactaaacgtagaacctgtcttattgagctttccggcgagagttcaatggGacaggttccagaaaactcaa
                          -35                   -10         +1                   
GAGAGT CTGTCT [HTIM]
[RS-EPT-CBR]
[TIM]
[1]
[2]
[3]
  acnAp1 1335424 ymiC, acnA 148 aatgttccgtcgttattccagacgactggcaactaacatcgcagcagcaagcctttatagAactgtttgctgaagatgatc
                          -35                    -10        +1                   
AAGCCT CTGGCA [HIPP]
[TIM]
[4]
  acnAp1 1335424 ymiC, acnA 148 aatgttccgtcgttattccagacgactggcaactaacatcgcagcagcaagcctttatagAactgtttgctgaagatgatc
                          -35               -10             +1                   
GCAGCAAGCCT CTGGCA [HIPP]
[TIM]
[4]
  acsp2 4287391 actP, yjcH, acs 20 atactaaacaaaactgccaatacccctacatttaacgcttatgccacatattattaacatCctacaaggagaacaaaagca
                               -35              -10         +1                   
ATATTATT TTTAACGCT [AIPP]
[HTIM]
[5]
[6]
[1]
  adap 2310427 alkB, ada 22 aaaaattaaagcgcaagattgttggtttttgcgtgatggtgaccgggcagcctaaaggctAtccttaaccagggagctgat
                             -35                -10         +1                   
CAGCCTAAAGG TTGCGT [TIM] [7]
  adap 2310427 alkB, ada 22 aaaaattaaagcgcaagattgttggtttttgcgtgatggtgaccgggcagcctaaaggctAtccttaaccagggagctgat
                             -35                     -10    +1                   
TAAAGG TTGCGT [TIM] [7]
  adhEp1 1298413 adhE 292 ttgttatctagttgtgcaaaacatgctaatgtagccaccaaatcatactacaatttattaActgttagctataatggcgaa
                         -35                -10             +1                   
CATACTACAAT GCTAAT [IMP]
[TIM]
[8]
[9]
  adhEp1 1298413 adhE 292 ttgttatctagttgtgcaaaacatgctaatgtagccaccaaatcatactacaatttattaActgttagctataatggcgaa
                       -35                       -10        +1                   
TACAAT ATGCTA [IMP]
[TIM]
[8]
[9]
  adhEp2 1298309 adhE 188 tttgcaaaaatttgatttggatcacgtaatcagtacccagaagtgagtaatcttgcttacGccacctggaagtgacgcatt
                       -35                 -10              +1                   
GTGAGTAATCT CACGTA [HIPP]
[TIM]
[8]
[9]
  adrAp 403687 dgcC 16 tacgaaaatggctcacccgaaatatcatacttctgcctttagctccgtctctataatttgGgaaaattgtttctgaatgtt
                               -35             -10          +1                   
GTCTCTATAAT TTCTGC [HIPP]
[TIM]
[10]
[11]
  aidBp 4414247 aidB 28 gataagaatgttttagcaatctctttctgtcatgaatccatggcagtgaccatactaatgGtgactgccattgatggaggg
                        -35                        -10      +1                   
CATACT TTTCTG [TIM]
[TIM]
[12]
[13]
[14]
[15]
[16]
  aidBp 4414247 aidB 28 gataagaatgttttagcaatctctttctgtcatgaatccatggcagtgaccatactaatgGtgactgccattgatggaggg
                             -35              -10           +1                   
GTGACCATACT GTCATG [TIM]
[TIM]
[12]
[13]
[14]
[15]
[16]
  aldBp 3756535 aldB 24 gctgtcgtaaagctgttaccgactggcgaagatttcgccagtcacgtctacccttgttatAcctcacaccgcaaggagacg
                          -35               -10             +1                   
ACGTCTACCCT GCGAAG [TIM]
[TIM]
[17]
  alkAp 2147559 alkA 19 tcgcgacaaccggaatatgaaagcaaagcgcagcgtctgaataacgtttatgctgaaagcGgatgaataaggagatgcgat
                           -35              -10             +1                   
ACGTTTATGCT AGCGCA [CV(RPF/RS-EPT-CBR)]
[RPF]
[RS-EPT-CBR]
[18]
[19]
[2]
  alkAp 2147559 alkA 19 tcgcgacaaccggaatatgaaagcaaagcgcagcgtctgaataacgtttatgctgaaagcGgatgaataaggagatgcgat
                      -35                        -10        +1                   
TATGCT AGCAAA [CV(RPF/RS-EPT-CBR)]
[RPF]
[RS-EPT-CBR]
[18]
[19]
[2]
  ansPp1 1526011 ansP 31 gaataatggtgataactatcatcgccaggatgaataaacattgttcatggcaacttatatGactttttcattaaagcaatc
                              -35              -10          +1                   
ATGGCAACTTA ATGAAT [TIM] [20]
  ansPp2 1526020 ansP 40 acccataaagaataatggtgataactatcatcgccaggatgaataaacattgttcatggcAacttatatgactttttcatt
                               -35                -10       +1                   
TTGTTCATGGC TCGCCA [TIM] [20]
  appCp 1037710 appC, appB, appX, appA 30 ggcgaatacctctggtcgtagagtttcaggataaagagggagatctaccattatcgggttAtttttctctcttcgcctaca
                        -35              -10                +1                   
AGATCTACCAT TTTCAG [HIPP] [21]
[22]
[23]
  appCp 1037710 appC, appB, appX, appA 30 ggcgaatacctctggtcgtagagtttcaggataaagagggagatctaccattatcgggttAtttttctctcttcgcctaca
                        -35                   -10           +1                   
TACCAT TTTCAG [HIPP] [21]
[22]
[23]
  appYp2 583656 appY 25 gcacatcatcctgattatgattgtgtatttaattggttgttatttgactactatcaacttGttttaattttatgataggtg
                                             -10            +1                   
TGACTACTATC   [HTIM] [15]
  araFp 1986238 araH, araG, araF 110 aattctgcgatgtgatattgctctcctatggagaattaatttctcgctaaaactatgtcaAcacagtcacttatcttttag
                       -35                 -10              +1                   
CTCGCTAAAAC CTCCTA [TIM] [24]
[15]
  araFp 1986238 araH, araG, araF 110 aattctgcgatgtgatattgctctcctatggagaattaatttctcgctaaaactatgtcaAcacagtcacttatcttttag
                             -35                      -10   +1                   
TATGTC TGGAGA [TIM] [24]
[15]
  araFp2 1986148 araH, araG, araF 20 aatgctttgttttccgattaatttaacgaatgtcattcgtttttgccctacacaaaacgaCactaaagctggagagaacca
                                          -10               +1                   
TTTGCCC   [HTIM] [15]
  arrSp 3658054 arrS 0 caagaataagttatcaataaccagtttgtgatctctgaagaatattactaaagttaaaatGtaatccgatttaaatatcga
                          -35               -10             +1                   
ATTACTAAAGT TTGTGA [HIPP] [25]
  arrSp 3658054 arrS 0 caagaataagttatcaataaccagtttgtgatctctgaagaatattactaaagttaaaatGtaatccgatttaaatatcga
                               -35                     -10  +1                   
TAAAAT ATCTCT [HIPP] [25]
  artPp1 903815 artM, artQ, artI, artP 81 ccgcccccgttattttgtgctatgtttattgaataatgcgctttgcttttaacttttaaaGcagaaatattgcataattat
                             -35              -10           +1                   
CTTTTAACTTT TTGAAT [TIM] [20]
  artPp2 903836 artM, artQ, artI, artP 102 gacatttatgctcgccgaccaccgcccccgttattttgtgctatgtttattgaataatgcGctttgcttttaacttttaaa
                           -35             -10              +1                   
ATGTTTATTGA CCCGTT [TIM] [20]
  artPp3 903843 artM, artQ, artI, artP 109 gaatgccgacatttatgctcgccgaccaccgcccccgttattttgtgctatgtttattgaAtaatgcgctttgcttttaac
                          -35               -10             +1                   
TGTGCTATGTT CCACCG [TIM] [20]
  asrp 1671327 asr 49 gttacacgctgaaaccaaccactcacggaagtctgccattcccagggatatagttatttcAacggccccgcagtggggtta
                                 -35              -10       +1                   
ATAGTTATTTC CTGCCA [IMP]
[TIM]
[TIM]
[26]
[27]
  asrp 1671327 asr 49 gttacacgctgaaaccaaccactcacggaagtctgccattcccagggatatagttatttcAacggccccgcagtggggtta
                      -35                        -10        +1                   
TATAGT CTCACG [IMP]
[TIM]
[TIM]
[26]
[27]
  astCp3 1832039 astE, astB, astD, astA, astC 57 tccgccgtttatgcacttttatcactggctggcacgaaccctgcaatctacatttacagcGcaaacattacttattattaa
                         -35                -10             +1                   
CAATCTACATT CTGGCT [CV(RPF/TIM)]
[HIPP]
[RPF]
[TIM]
[28]
[29]
  blcp 4377745 blc 23 catcgggtccgaattttcggaccttttctccgcttttccttgctgtcatctacacttagaAaaaaaccagtaaggaaacat
                             -35              -10           +1                   
TCATCTACACT TCCGCT [TIM]
[TIM]
[30]
  blrp 1704512 blr 39 atcgcaaaaacctcagtaaaaatcttgctggagctattattgctaagtaacatttaccccCtgaagttaatggatcaatca
    [RS-EPT-CBR]
[TIM]
[2]
[31]
[32]
  bolAp1 454434 bolA 38 aacctaaatatttgttgttaagctgcaatggaaacggtaaaagcggctagtatttaaaggGatggatgacatctcagcgtt
                       -35                 -10              +1                   
GCGGCTAGTAT CTGCAA [AIPP]
[CV(RPF/RS-EPT-CBR)]
[CV(RPF/TIM)]
[RPF]
[RS-EPT-CBR]
[TIM]
[TIM]
[33]
[34]
[35]
[36]
[2]
[37]
  bolAp1 454434 bolA 38 aacctaaatatttgttgttaagctgcaatggaaacggtaaaagcggctagtatttaaaggGatggatgacatctcagcgtt
                       -35                      -10         +1                   
TAGTAT CTGCAA [AIPP]
[CV(RPF/RS-EPT-CBR)]
[CV(RPF/TIM)]
[RPF]
[RS-EPT-CBR]
[TIM]
[TIM]
[33]
[34]
[35]
[36]
[2]
[37]
  bsmAp 4416869 bsmA 99 atgacatgaagaaatccttagcacaagtttctgctggcggtattagttcataatgttgagAtgtgggttacgctttcgtca
                                                 -10        +1                   
CATAAT   [NAS] [38]
  cbpAp2 1063828 cbpM, cbpA 53 tttcaataacatattctgtgttggcatatgaaattttgaggattaccctacacttataggAgttaccttacaggggttcct
                            -35             -10             +1                   
TACCCTACACT ATGAAA [CV(RPF/RS-EPT-CBR)]
[CV(RPF/TIM)]
[HIPP]
[RPF]
[RS-EPT-CBR]
[TIM]
[2]
[39]
[40]
  cbpAp6 1064037 cbpM, cbpA 262 ttccaggcctgtttcaaataattatttgcagtgcaactaattccatgtatattactacccAtatatagcgtctataaaatt
                         -35                    -10         +1                   
TATATT TTTGCA [TIM] [41]
  cfap1 1741201 cfa 212 tacttaggctgctaacaaaattttgttgtatgattgaaattagcggcctatactaatttcGagttgttaaagctacgataa
                         -35                -10             +1                   
CGGCCTATACT GTTGTA [HIPP]
[RS-EPT-CBR]
[TIM]
[35]
[2]
[42]
  cfap1 1741201 cfa 212 tacttaggctgctaacaaaattttgttgtatgattgaaattagcggcctatactaatttcGagttgttaaagctacgataa
                          -35                    -10        +1                   
TATACT TTGTAT [HIPP]
[RS-EPT-CBR]
[TIM]
[35]
[2]
[42]
  cfap2 1741379 cfa 34 agactcgcggttttttctgcgagatttctcacaaagcccaaaaagcgtctacgctgttttAaggttctgatcaccgaccag
                            -35              -10            +1                   
GCGTCTACGCT CTCACA [HIPP]
[TIM]
[42]
  cpxRp 4105686 cpxA, cpxR 16 gggggtgtaaaacaacgtaaagtcatggattagcgacgtctgatgacgtaatttctgcctCggaggtatttaaacaatgaa
                         -35                     -10        +1                   
TAATTT ATGGAT [HIPP] [43]
  crrpI 2535610 crr 224 aggcaaatggactggcatgtgtggtgagcttgctggcgatgaacgtgctacacttctgttGctggggatgggtctggacga
    [TIM] [44]
  csgBp 1103859 csgB, csgA, csgC 92 aagaaaaatacaacgcgcgggtgagttattaaaaatatttccgcagacatactttccatcGtaacgcagcgttaacaaaat
                          -35                   -10         +1                   
CATACTT TTATTA [CV(RPF/TIM)]
[RPF]
[TIM]
[45]
[46]
  csgBp 1103859 csgB, csgA, csgC 92 aagaaaaatacaacgcgcgggtgagttattaaaaatatttccgcagacatactttccatcGtaacgcagcgttaacaaaat
                             -35                -10         +1                   
CATACTTTCCA TTAAAA [CV(RPF/TIM)]
[RPF]
[TIM]
[45]
[46]
  csgBp 1103859 csgB, csgA, csgC 92 aagaaaaatacaacgcgcgggtgagttattaaaaatatttccgcagacatactttccatcGtaacgcagcgttaacaaaat
                             -35                  -10       +1                   
TACTTT TTAAAA [CV(RPF/TIM)]
[RPF]
[TIM]
[45]
[46]
  csgDp1 1103344 csgG, csgF, csgE, csgD 148 agttacatttagttacatgtttaacacttgatttaagatttgtaatggctagattgaaatCagatgtaatccattagtttt
                            -35              -10            +1                   
ATGGCTAGATT TTGATT [TIM] [47]
[48]
  csgDp1 1103344 csgG, csgF, csgE, csgD 148 agttacatttagttacatgtttaacacttgatttaagatttgtaatggctagattgaaatCagatgtaatccattagtttt
                            -35                   -10       +1                   
TAGATT TTGATT [TIM] [47]
[48]
  csgDp2 1103335 csgG, csgF, csgE, csgD 139 tagttacatgtttaacacttgatttaagatttgtaatggctagattgaaatcagatgtaaTccattagttttatattttac
                        -35                     -10         +1                   
AAATCA TTAAGA [TIM] [48]
  csgDp2 1103335 csgG, csgF, csgE, csgD 139 tagttacatgtttaacacttgatttaagatttgtaatggctagattgaaatcagatgtaaTccattagttttatattttac
                        -35                -10              +1                   
GATTGAAATCA TTAAGA [TIM] [48]
  csgDp2 1103335 csgG, csgF, csgE, csgD 139 tagttacatgtttaacacttgatttaagatttgtaatggctagattgaaatcagatgtaaTccattagttttatattttac
                   -35                   -10                +1                   
TAGATTGAAATC TTGATT [TIM] [48]
  csiDp 2788927 glaH, lhgD, gabD, gabT, gabP 58 ataagaaaacaatatgtcgcttttgtgcgcatttttcagaaatgtagatatttttagattAtggctacgaaatgagcatcg
                                 -35              -10       +1                   
ATTTTTAGATT TTTTCA [TIM]
[TIM]
[49]
[50]
  csiEp 2665401 csiE 34 cttgccaacatttctgatgattagcattcccttcgccatttccttgagcaaactttagctAttcttatcaattatgcttat
                           -35                     -10      +1                   
AACTTT TTCCCT [HIPP]
[TIM]
[51]
  csiEp 2665401 csiE 34 cttgccaacatttctgatgattagcattcccttcgccatttccttgagcaaactttagctAttcttatcaattatgcttat
                           -35               -10            +1                   
TGAGCAAACTT TTCCCT [HIPP]
[TIM]
[51]
  csrAp1 2819373 csrA 227 tacctgcagcgttagccagtgtgaaaggctgggtcagcgcgaaattgcaataatataagcGtcaggcaatgccgtggactc
                         -35                -10             +1                   
ATTGCAATAAT AAGGCT [HIPP]
[TIM]
[52]
  csrAp1 2819373 csrA 227 tacctgcagcgttagccagtgtgaaaggctgggtcagcgcgaaattgcaataatataagcGtcaggcaatgccgtggactc
                             -35                   -10      +1                   
TAATAT CTGGGT [HIPP]
[TIM]
[52]
  csrAp3 2819273 csrA 127 aacgctatcgacaacgataaagtcaggttgaagttgtgtatatcggctaaacttaggtttAacagaatgtaatgccatgac
                        -35                -10              +1                   
TCGGCTAAACT CAGGTT [HIPP]
[HTIM]
[RS-EPT-CBR]
[TIM]
[53]
[2]
[52]
  cyaRp 2167114 cyaR 0 tggaaaattcttagaaaccgatcacatacagctgcatttattaaggttatcatccgtttcGctgaaaaacataacccataa
                         -35               -10              +1                   
AAGGTTATCAT CATACA [AIPP]
[HTIM]
[RS-EPT-CBR]
[TIM]
[TIM]
[54]
[55]
[15]
[2]
  cyaRp 2167114 cyaR 0 tggaaaattcttagaaaccgatcacatacagctgcatttattaaggttatcatccgtttcGctgaaaaacataacccataa
                          -35                   -10         +1                   
TATCA ATACAG [AIPP]
[HTIM]
[RS-EPT-CBR]
[TIM]
[TIM]
[54]
[55]
[15]
[2]
  cyaRp 2167114 cyaR 0 tggaaaattcttagaaaccgatcacatacagctgcatttattaaggttatcatccgtttcGctgaaaaacataacccataa
                     -35                        -10         +1                   
TATCAT ATCACA [AIPP]
[HTIM]
[RS-EPT-CBR]
[TIM]
[TIM]
[54]
[55]
[15]
[2]
  ddpXp2 1563201 ddpF, ddpD, ddpC, ddpB, ddpA, ddpX 125 tacgattccgggagattccttccttaacttcccctcttgcaccaaaactgcactacgctgCacaaatgttgatcaaaagtt
                                                -10         +1                   
CTGCACT   [HIPP] [56]
  ddpXp3 1563249 ddpF, ddpD, ddpC, ddpB, ddpA, ddpX 173 gggttttcatttaacgtgacactgtcacttaaatactgtgatttcagctacgattccgggAgattccttccttaacttccc
                                                -10         +1                   
CTACGAT   [HIPP] [56]
  dhaKp 1250944 dhaM, dhaL, dhaK 106 aaagtttcaatatggaacattcattaaagcatatgtttcactatgaaacataatttgggcTaattttcttttcccttgcct
                    -35              -10                    +1                   
TTCACTATGAA TTCATT [AIPP] [53]
  dhaRp 1251003 dhaR 63 tagcccaaattatgtttcatagtgaaacatatgctttaatgaatgttccatattgaaactTttacgtgtattaatacttaa
                        -35                 -10             +1                   
TGTTCCATATT GAAACA [AIPP] [57]
  dinBp 250880 dinB, yafN, yafO, yafP 18 cgcgttaaatgctgaatctttacgcatttctcaaaccctgaaatcactgtatactttaccAgtgttgagaggtgagcaatg
                            -35              -10            +1                   
CACTGTATACT TTCTCA [AIPP] [58]
  dinBp 250880 dinB, yafN, yafO, yafP 18 cgcgttaaatgctgaatctttacgcatttctcaaaccctgaaatcactgtatactttaccAgtgttgagaggtgagcaatg
                            -35                   -10       +1                   
TATACT TTCTCA [AIPP] [58]
  dkgAp 3156571 dkgA 52 cccgctaagctttttacgcctcaaactttcgttttcgggcatttcgtccagacttaagttCacaacacctcaccggagcct
    [HTIM] [53]
  dkgBp 229098 dkgB 69 tttttttcgtctgtatatctattattgccagaatcgcaaaaatcctctgcattttacgctCtttttcctcaacagtctgaa
                                 -35              -10       +1                   
CATTTTACGCT ATCGCA [AIPP] [57]
  dnaNp1 3882733 recF, dnaN 412 aacgacattcgtttgccgggcgaagtggcgttctttatcgccaagcgtctacgatctaacGtacgtgagctggaaggggcg
                         -35                 -10            +1                   
GCGTCTACGAT GTGGCG [HIPP]
[TIM]
[59]
[60]
  dnaNp1 3882733 recF, dnaN 412 aacgacattcgtttgccgggcgaagtggcgttctttatcgccaagcgtctacgatctaacGtacgtgagctggaaggggcg
                         -35                      -10       +1                   
TACGAT GTGGCG [HIPP]
[TIM]
[59]
[60]
  dnaNp2 3882590 recF, dnaN 269 tgaggcgctgcgcgacttgctggcattgcaggaaaaactggtcaccatcgacaatattcaGaagacggtggcggagtacta
                          -35                        -10    +1                   
AATATT TTGCAG [HIPP]
[TIM]
[59]
[60]
  dnaNp2 3882590 recF, dnaN 269 tgaggcgctgcgcgacttgctggcattgcaggaaaaactggtcaccatcgacaatattcaGaagacggtggcggagtacta
                          -35                -10            +1                   
CCATCGACAAT TTGCAG [HIPP]
[TIM]
[59]
[60]
  dnaNp4 3882348 recF, dnaN 27 gccgtaagatcgagcagttgcgtgaagagagccacgatatcaaagaagatttttcaaattTaatcagaacattgtcatcgt
                      -35                       -10         +1                   
GATTTT GTGAAG [HIPP]
[TIM]
[59]
[60]
  dnaNp4 3882348 recF, dnaN 27 gccgtaagatcgagcagttgcgtgaagagagccacgatatcaaagaagatttttcaaattTaatcagaacattgtcatcgt
                               -35                -10       +1                   
TTTTTCAAATT GCCACG [HIPP]
[TIM]
[59]
[60]
  dpsp 848950 dps 39 attagtgtgataggaacagccagaatagcggaacacatagccggtgctatacttaatctcGttaattactgggacataaca
                          -35              -10              +1                   
GGTGCTATACT TAGCGG [RS-EPT-CBR]
[TIM]
[TIM]
[61]
[20]
[2]
  dpsp 848950 dps 39 attagtgtgataggaacagccagaatagcggaacacatagccggtgctatacttaatctcGttaattactgggacataaca
                         -35                    -10         +1                   
TATACT ATAGCG [RS-EPT-CBR]
[TIM]
[TIM]
[61]
[20]
[2]
  ecnBp 4376509 ecnB 44 ttctcttccgaaaaatcatcagattcccatcatttttggcgatgttgtctattattaattTgctataggcaaacataaata
                         -35                 -10            +1                   
TTGTCTATTAT TCCCAT [TIM]
[TIM]
[62]
  elaBp 2381053 elaB 26 ttgggatggcacgcgaggtaattcaggcgtaatcaacaacccttgtctatagttagtgacAggttttacgcaaatggagaa
                      -35                     -10           +1                   
TCTATAGTTA TTCAGG [ICA]
[IEP]
[RS-EPT-CBR]
[TIM]
[63]
[64]
[2]
[65]
  enop4 2907968 eno 27 gtaaaaaagttagagcggcaacgcgtaccctgggtacgcgttgtttgtctggagtttcagTttaactagtgacttgaggaa
                                                 -10        +1                   
CTGGAGTT   [HTIM]
[RS-EPT-CBR]
[1]
[2]
  enop7 2908152 eno 211 tctgcgcgttgcgggccgttccggggatgatcagttggtcgagatcatcgaagttccgaaTcacccgtggttcgtggcttg
                                               -10          +1                   
ATCGAAGT   [HTIM] [1]
  epdp 3073823 fbaA, pgk, epd 132 aatgtcttcttcggctggacaaacattccttttattccacgtttcgcttatcctagctgaAgcgtttcagtcgattaaatg
                          -35                    -10        +1                   
TATCCT TTCCTT [HIPP]
[HTIM]
[RS-EPT-CBR]
[TIM]
[66]
[67]
[1]
[2]
  epdp 3073823 fbaA, pgk, epd 132 aatgtcttcttcggctggacaaacattccttttattccacgtttcgcttatcctagctgaAgcgtttcagtcgattaaatg
                          -35               -10             +1                   
TCGCTTATCCT TTCCTT [HIPP]
[HTIM]
[RS-EPT-CBR]
[TIM]
[66]
[67]
[1]
[2]
  evgAp1 2483641 evgA, evgS 114 tccctgattttattgttgacatttcatttatgccgactatttatatggtatacttgtcgaAttatcttaaaggaagctcag
                           -35              -10             +1                   
TATGGTATACT TTTATG [RS-EPT-CBR]
[TIM]
[2]
[68]
  fadLp 2461205 fadL 101 tttgaaaaaagatagaaacatacttgcaacattccagctggtccgacctatactctcgccActggtctgatttctaagatg
                        -35                 -10             +1                   
CGACCTATACT TTGCAA [HIPP]
[TIM]
[69]
[70]
[35]
  fbaBp 2178667 fbaB 103 gcgctaacattttttctgatgaatcgagccaacagaaaacgctgaaaaaacatccaaaagAtggaaaaactcgcccgtaac
                                 -35              -10       +1                   
ACATCCAAAAG CAGAAA [AIPP]
[TIM]
[20]
  frdAp 4382412 frdD, frdC, frdB, frdA 94 taaaaaaatcgatctcgtcaaatttcagacttatccatcagactatactgttgtacctatAaaggagcagtggaatagcgt
                       -35                  -10             +1                   
TATACT TTTCAG [TIM] [71]
  ftsQp1 102867 ftsQ, ftsA, ftsZ 288 tactcggtgaagaaattttaccgtcaatacgtattcaaccgtccggaaccttctatgattAtgaggcgaagtatctctctg
                                -35              -10        +1                   
CCTTCTATGAT TATTCA [HIPP]
[TIM]
[72]
[73]
[74]
  ftsQp1 102867 ftsQ, ftsA, ftsZ 288 tactcggtgaagaaattttaccgtcaatacgtattcaaccgtccggaaccttctatgattAtgaggcgaagtatctctctg
                                 -35                  -10   +1                   
TATGAT ATTCAA [HIPP]
[TIM]
[72]
[73]
[74]
  ftsQp2 102742 ftsQ 413 cagtgtgggaatgtcaaaagtagtagcagaaaatgctctacaagatgcattaagattggcAtttcagcacgatgaagaagt
                           -35                -10           +1                   
TGCATTAAGAT CAGAAA [HIPP]
[TIM]
[72]
[73]
[75]
  fumCp 1686709 fumC 121 cagatacaactcacacaatgcacccgctgtgtgaaataaacagagccgcccttcggggcgGtttttttacatggcacgaaa
                               -35             -10          +1                   
CGCCCTTCGGG GTGAAA [TIM]
[TIM]
[4]
[76]
  gabDp1 2791172 gabD, gabT, gabP 101 ggcagcgacatcagcaattcctattggtgcgcatattgtcagcaaggtacaaacgctgttGgcaagccagagtaaccccgg
                        -35                -10              +1                   
CAAGGTACAAA TTGGTG [HIPP]
[TIM]
[TIM]
[77]
  gabDp1 2791172 gabD, gabT, gabP 101 ggcagcgacatcagcaattcctattggtgcgcatattgtcagcaaggtacaaacgctgttGgcaagccagagtaaccccgg
                        -35                     -10         +1                   
TACAAA TTGGTG [HIPP]
[TIM]
[TIM]
[77]
  gabDp2 2790912 gabD, gabT, gabP 361 gagattttgggctcgtcggggattcgccgggtgctgcaaaaccatctacgctcaggactgGgcgagatgaaaaactcgctg
                        -35               -10               +1                   
CCATCTACGCT TCGCCG [HIPP]
[TIM]
[50]
  gadAp 3667607 gadX, gadA 27 tatttaaattaagcctgtaatgccttgcttccattgcggataaatcctacttttttattgCcttcaaataaatttaaggag
                        -35                -10              +1                   
AATCCTACTTT CTTGCT [HIPP]
[TIM]
[78]
[79]
[80]
  gadAp 3667607 gadX, gadA 27 tatttaaattaagcctgtaatgccttgcttccattgcggataaatcctacttttttattgCcttcaaataaatttaaggag
                         -35                    -10         +1                   
TACTTT TTGCTT [HIPP]
[TIM]
[78]
[79]
[80]
  gadAp 3667607 gadX, gadA 27 tatttaaattaagcctgtaatgccttgcttccattgcggataaatcctacttttttattgCcttcaaataaatttaaggag
                         -35                    -10         +1                   
TACTTTTTT TTGCTT [HIPP]
[TIM]
[78]
[79]
[80]
  gadBp 1572072 gadC, gadB 27 tatttaaacacgagtcctttgcacttgcttactttatcgataaatcctacttttttaatgCgatccaatcattttaaggag
                        -35                -10              +1                   
AATCCTACTTT CTTGCT [HIPP]
[TIM]
[78]
[79]
[80]
  gadBp 1572072 gadC, gadB 27 tatttaaacacgagtcctttgcacttgcttactttatcgataaatcctacttttttaatgCgatccaatcattttaaggag
                         -35                    -10         +1                   
TACTTT TTGCTT [HIPP]
[TIM]
[78]
[79]
[80]
  gadEp 3658345 gadE, gadF, mdtE, mdtF 21 atattgaacaacgattcggacaaggatgtaaataatgaaaaggatgacatattcgaaacgAtaacggctaaggagcaagtt
                                  -35             -10       +1                   
TATTCGAAACG AATGAA [TIM]
[TIM]
[58]
[81]
  gadEp1 3658242 gadE, gadF 124 ttaggatcaatatatggagtgcgtgatggataaatctgaagtattgattagtgttaatagAcgtattagttcacgaagggt
                           -35              -10             +1                   
TTGATTAGTGT TGGATA [IEP]
[TIM]
[82]
[83]
  gadXp 3665839 gadW, gadX 29 tttaaatttatttatcaatcaatttgacttaagagggcggcgtgctacattaataaacagTaatatgtttatgtaatatta
                        -35              -10                +1                   
CGTGCTACATT TTGACT [HIPP]
[TIM]
[TIM]
[84]
  gadYp 3664864 gadY 0 atagcttatgtttataaaaaaatggctgatcttatttccagtaaaagttatatttaacttActgagagcacaaagtttccc
                          -35               -10             +1                   
AAAGTTATATT CTGATC [AIPP]
[IMP]
[TIM]
[TIM]
[85]
  galEp1 792081 galM, galK, galT, galE 26 gattccactaatttattccatgtcacacttttcgcatctttgttatgctatggttatttcAtaccataagcctaatggagc
                    -35                     -10             +1                   
TATGCT ATGTCA [CV(RPF/TIM)]
[RPF]
[TIM]
[86]
[87]
[88]
[89]
  galEp1 792081 galM, galK, galT, galE 26 gattccactaatttattccatgtcacacttttcgcatctttgttatgctatggttatttcAtaccataagcctaatggagc
                            -35             -10             +1                   
TATGCTATGGT CTTTTC [CV(RPF/TIM)]
[RPF]
[TIM]
[86]
[87]
[88]
[89]
  gapAp1 1862735 gapA 36 gtcgcaatgattgacacgattccgcttgacgctgcgtaaggtttttgtaattttacaggcAaccttttattcactaacaaa
                          -35                    -10        +1                   
AATTTT TTGACG [HIPP]
[HTIM]
[IMP]
[RS-EPT-CBR]
[TIM]
[67]
[90]
[1]
[2]
[91]
  gapAp1 1862735 gapA 36 gtcgcaatgattgacacgattccgcttgacgctgcgtaaggtttttgtaattttacaggcAaccttttattcactaacaaa
                          -35               -10             +1                   
TTTGTAATTTT TTGACG [HIPP]
[HTIM]
[IMP]
[RS-EPT-CBR]
[TIM]
[67]
[90]
[1]
[2]
[91]
  glgCp3 3569571 glgP, glgA, glgC 243 tttggtggagaatcgctggtgggaagaaggcgacggcaatgtccgttggctaaatcgataTgctcaacctttaagcacgga
                           -35                -10           +1                   
TTGGCTAAATC AAGGCG [TIM] [92]
  glgSp1 3192012 glgS 73 ttcactaaaaagtgtgatcggggacaatatatttacgcacgttatgtttaaaggcactacActgattggggaatactgaaa
                  -35                 -10                   +1                   
CACGTTATGTT TCGGGG [HIPP]
[TIM]
[93]
  glgSp2 3192002 glgS 63 agtgtgatcggggacaatatatttacgcacgttatgtttaaaggcactacactgattgggGaatactgaaatcagaaaaag
                        -35                -10              +1                   
GGCACTACACT TACGCA [TIM] [93]
  glkp 2509461 glk 35 ttacagggagcctgcctttccggcgttgttgttatgcccccaggtatttacagtgtgagaAagaattattttgactttagc
                                                -10         +1                   
TTACAGTG   [HIPP]
[HTIM]
[94]
[1]
  glkp1 2509447 glk 21 cctttccggcgttgttgttatgcccccaggtatttacagtgtgagaaagaattattttgaCtttagcggagcagttgaaga
                                              -10           +1                   
AAAGAATT   [HTIM]
[RS-EPT-CBR]
[53]
[1]
[2]
  glsAp 511573 glsA, ybaT 68 ggattagacatttatctctttgttttcctgtagttaagttgcgggtgctaagttaaatcaGgatgcctgaaaatcggcacc
    [TIM] [95]
[31]
  gltBp 3354509 gltB, gltD, gltF 216 acatttctgtaccaataagcttgccatttgacctgtatcagctttcccgataagttggaaAtccgctggaagctttctgga
                            -35                    -10      +1                   
TAAGTT TTGACC [HIPP]
[TIM]
[96]
[31]
[97]
  gorp 3646112 gor 187 aactggcggtactgccagacagcgatcgccgtggcatgaccgcttccggcatgattgtgaTtaacccgccgtggaaactgg
                         -35                      -10       +1                   
CATGAT ATCGCC [AIPP] [58]
  gpmAp 787632 gpmA 37 tattttcgctatggttatgcgtaagcattgctgttgcttcgtcgcggcaatataatgagaAttattatcattaaaagatga
                           -35                    -10       +1                   
ATATAATG ATTGCTGTT [AIPP]
[HTIM]
[RS-EPT-CBR]
[1]
[2]
[98]
  gpmAp2 787670 gpmA 75 tgcaactcaatattcacaacaaccttacactgcgccactattttcgctatggttatgcgtAagcattgctgttgcttcgtc
                                               -10          +1                   
CTATGGTT   [HTIM]
[RS-EPT-CBR]
[1]
[2]
  gpmMp2 3785187 gpmM, envC, yibQ 73 gacgaaaaaaaagcgtaaatctggcatcggcttgccgcgagcggtcgtatattttgatctTcagaggctattttatcgatt
                                                -10         +1                   
TATATT   [HTIM] [15]
  gyrBp 3880150 gyrB 31 atagacatgtcggacgaaaattcgaagatgtttaccgtggaaaagggtaaaataacggatTaacccaagtataaatgagcg
                         -35               -10              +1                   
AAGGGTAAAAT AAGATG [HIPP]
[IMP]
[TIM]
[99]
[100]
  gyrBp 3880150 gyrB 31 atagacatgtcggacgaaaattcgaagatgtttaccgtggaaaagggtaaaataacggatTaacccaagtataaatgagcg
                     -35                        -10         +1                   
TAAAAT TTCGAA [HIPP]
[IMP]
[TIM]
[99]
[100]
  hchAp2 2035630 hchA 205 tccacagcactaaatctctccccgccaccccgtacctctgataatggtctaaaatcattgAagccacttgcgacgacgttg
                            -35              -10            +1                   
TGGTCTAAAAT CCCCGT [TIM] [101]
  hdeAp 3656791 yhiD, hdeB, hdeA 51 tctgattttgatattttccatcaacatgacatatacagaaaaccaggttataacctcagtGtcgaaattgattcgtgacgg
                     -35               -10                  +1                   
AAAACCAGGTT TCAACA [HIPP]
[RS-EPT-CBR]
[TIM]
[45]
[102]
[79]
[2]
  hdeAp 3656791 yhiD, hdeB, hdeA 51 tctgattttgatattttccatcaacatgacatatacagaaaaccaggttataacctcagtGtcgaaattgattcgtgacgg
                          -35                    -10        +1                   
TATAAC ATGACA [HIPP]
[RS-EPT-CBR]
[TIM]
[45]
[102]
[79]
[2]
  hdeAp 3656791 yhiD, hdeB, hdeA 51 tctgattttgatattttccatcaacatgacatatacagaaaaccaggttataacctcagtGtcgaaattgattcgtgacgg
                           -35                   -10        +1                   
TATAACCT TGACA [HIPP]
[RS-EPT-CBR]
[TIM]
[45]
[102]
[79]
[2]
  hdeDp 3656960 hdeD 35 taggaaatttttattaaatcgactgcattcttagacgcgtttttggcatagattgatagcAggggattttcttcttaattt
                            -35                  -10        +1                   
TAGATT TTCTTA [HIPP]
[IMP]
[MSI]
[RS-EPT-CBR]
[TIM]
[103]
[82]
[79]
[2]
[31]
[104]
  hdfRp 3948021 hdfR 54 cacgctcctaattctttgaccgagctagttatggcgcggagtattagttacgcttgacagAgtgtaaaacaaaacatttaa
                         -35                -10             +1                   
TTAGTTACGCT CTAGTT [IHBCE] [57]
  hmpp 2685797 hmp 38 tttctgaaaaacaccaaagaaccatttacattgcagggctattttttataagatgcatttGagatacatcaattaagatgc
                         -35              -10               +1                   
TTTTTTATAAG TTTACA [CV(RPF/TIM)]
[HIPP]
[RPF]
[TIM]
[TIM]
[105]
[106]
  hofMp 3522928 hofP, hofO, hofN, hofM 177 ttaatgtcgccacatccggcagttgtggctcgatgtagcggtataggccataaatcgagcCtgctcccagcagaatgcaac
                         -35                -10             +1                   
TAGGCCATAAA GTGGCT [AIPP] [57]
  hyaAp 1031984 hyaA, hyaB, hyaC, hyaD, hyaE, hyaF 155 aaaagataaatccacacagtttgtattgttttgtgcaaaagtttcactacgctttattaaCaatactttctggcgacgtgc
                     -35                        -10         +1                   
TACGCT TTGTAT [HIPP]
[IMP]
[TIM]
[22]
[107]
  hyaAp 1031984 hyaA, hyaB, hyaC, hyaD, hyaE, hyaF 155 aaaagataaatccacacagtttgtattgttttgtgcaaaagtttcactacgctttattaaCaatactttctggcgacgtgc
                          -35              -10              +1                   
TTCACTACGCT TTGTTT [HIPP]
[IMP]
[TIM]
[22]
[107]
  ihfAp4 1795721 ihfA 169 gatattttatccgaatgtaagaaagttggcgtaaatcaggtagttggcgtaaacttatttGacgtgtaccgcggtaagggt
                          -35                -10            +1                   
TGGCGTAAACT TTGGCG [HIPP]
[TIM]
[108]
[109]
  ihfBp 963749 ihfB 79 tttattccgaagtttgttgagtttacttgacagattgcaggtttcgtcctgtaatcaagcActaagggcggctacggccgc
                           -35               -10            +1                   
CGTCCTGTAAT TTGACA [HIPP]
[TIM]
[108]
[110]
  ilvYp 3957867 ilvY 47 gtttgcgagattgaattcactatatgacaggaaatttattgcggaaattgatatattcacAacgtcacattgcaatttttg
                             -35                    -10     +1                   
TATATT AGGAAA [HIPP]
[IEP]
[IMP]
[TIM]
[111]
[112]
[113]
  ilvYp 3957867 ilvY 47 gtttgcgagattgaattcactatatgacaggaaatttattgcggaaattgatatattcacAacgtcacattgcaatttttg
                     -35               -10                  +1                   
TTGCGGAAATT TATATG [HIPP]
[IEP]
[IMP]
[TIM]
[111]
[112]
[113]
  insC-5p 3186040 insC-5, insCD-5, insD-5, yqiH, yqiI, yqiG 147 gttcgcccggccacatcattaacggattaatgataagtggatcagatgtataaaaaattaAaattaaccacaataagcgaa
                                                 -10        +1                   
TATAAA   [HTIM] [15]
  insN-1p 270226 insI-1, insN 377 tttgctaagagcttcattcatgaatccttttcactagggatgaagtggtttactgaatttGgccacctgaacagaggtgat
                                              -10           +1                   
TGGTTTACT   [HTIM] [15]
  iraDp2 4556856 idlP, iraD 57 gacttttttcctgaaaagtcagtagatattcataggcaagtaaggttttatactttgctgAcaggattcaggcctgtctca
                         -35                -10             +1                   
GGTTTTATACT GATATT [HIPP]
[RS-EPT-CBR]
[TIM]
[53]
[114]
[2]
  iraDp2 4556856 idlP, iraD 57 gacttttttcctgaaaagtcagtagatattcataggcaagtaaggttttatactttgctgAcaggattcaggcctgtctca
                            -35                  -10        +1                   
TATACT ATTCAT [HIPP]
[RS-EPT-CBR]
[TIM]
[53]
[114]
[2]
  katEp 1813814 katE 53 aacaccgtttccagaatagtctccgaagcgggatctggctggtggtctatagttagagagTtttttgaccaaaacagcggc
                       -35                 -10              +1                   
TGGTCTATAGT CCGAAG [IMP]
[TIM]
[TIM]
[115]
[116]
  kbpp4 2796814 kbp 28 attaaacctgtgctcatccccgcggcgttaacgcgccgcgttcctctgctacactttctgAgtgtttccgttaacgaatga
                                                -10         +1                   
GCTACACT   [ICWHO] [58]
  ldcCp null ldcC       [IMP]
[TAS]
[117]
[118]
[119]
  lsrAp 1601460 lsrA, lsrC, lsrD, lsrB, lsrF, lsrG, tam 30 atatgtgcaatgtccacctaaggttatgaacaaattaaaagcagaaatacatttgttcaaAactcacctgcaaaactgaac
                          -35                 -10           +1                   
AATACATTTGT ATGAAC [AIPP] [57]
[120]
[121]
  luxSp1 2815065 luxS 332 tgcttcgataatcccgatctgactttctctgcccgtatcttaaggtctatgattgatactGgtattggcggaacaggcaaa
                          -35              -10              +1                   
AGGTCTATGAT TCTCTG [HIPP]
[TIM]
[122]
  mdtAp 2153979 mdtA, mdtB, mdtC, mdtD, baeS, baeR 37 ccagacagtgtttcataattcctccatttttctcccttattggctggctacactagtatcAttccgcgaaacgtttcagga
                         -35                -10             +1                   
CTGGCTACACT CATTTT [AIPP] [57]
  metKp 3086577 metK 129 gattcaaaaaaaagtggaaatagggtgaagaattgacctaaaatagccatccagatgttaAtccatccataccgattaaca
                                 -35                  -10   +1                   
GATGTT TTGACC [HIPP]
[TIM]
[TIM]
[31]
[123]
  mglBp 2240566 mglC, mglA, mglB 218 cgctttcaatctgtgagtgatttcacagtatcttaacaatgtgatagctatgattgcaccGttttaacgttgtaacccgta
                        -35                 -10             +1                   
ATAGCTATGAT CACAGT [HIPP]
[IMP]
[124]
[125]
  mglBp 2240566 mglC, mglA, mglB 218 cgctttcaatctgtgagtgatttcacagtatcttaacaatgtgatagctatgattgcaccGttttaacgttgtaacccgta
                      -35                        -10        +1                   
TATGAT TTCACA [HIPP]
[IMP]
[124]
[125]
  micFp 2313084 micF 0 aagtatttgacagcactgaatgtcaaaacaaaaccttcactcgcaactagaataactcccGctatcatcattaactttatt
                      -35                       -10         +1                   
TAGAAT GTCAAA [HIPP]
[TIM]
[126]
[31]
  mlrAp 2214840 mlrA 26 tagatgcacaaaaaacgggcaaaactacctggttcgcaaaactgcgtctaaagttaaaccGggacctcgcgagcaagggtg
                          -35               -10             +1                   
GCGTCTAAAGT TACCTG [HIPP]
[TIM]
[58]
[127]
  mlrAp 2214840 mlrA 26 tagatgcacaaaaaacgggcaaaactacctggttcgcaaaactgcgtctaaagttaaaccGggacctcgcgagcaagggtg
                         -35                     -10        +1                   
TAAAGT CTACCT [HIPP]
[TIM]
[58]
[127]
  mnmGp 3925674 rsmG, mnmG 41 atacccaggatcccaggtctttctcaagccgacaaagttgagtagaatccacggcccgggCttcaatccattttcataccg
                     -35                   -10              +1                   
TAGAAT TTCTCA [TIM] [128]
  mplp1 4455728 mpl 57 ctcaatgttgcgctcaggtgaatcgcgccagcaaattacggattatcctgaaatgcgtttCtcacttgcccgacatatgcg
                       -35             -10                  +1                   
CGGATTATCCT TCGCGC [HIPP] [129]
  mplp1 4455728 mpl 57 ctcaatgttgcgctcaggtgaatcgcgccagcaaattacggattatcctgaaatgcgtttCtcacttgcccgacatatgcg
                  -35                       -10             +1                   
TATCCT GTGAAT [HIPP] [129]
  msyBp 1114213 msyB 32 atcgaactgatttttcgcctttcatacttgcaaaagcggagaatcagctatccttttcccTgaaacctcatcaactcaaag
                            -35             -10             +1                   
TCAGCTATCCT TTGCAA [TIM] [20]
  mtnp 179183 yadS, btuF, mtn 30 gtgccatgtcctctcccgcgtgagaaatacgcttccccgtaagcgcatggtaaactatgcCttcaaatcgggcttatcgcg
                            -35               -10           +1                   
CATGGTAAACT TACGCT [HIPP]
[TIM]
[130]
  mtnp 179183 yadS, btuF, mtn 30 gtgccatgtcctctcccgcgtgagaaatacgcttccccgtaagcgcatggtaaactatgcCttcaaatcgggcttatcgcg
                           -35                     -10      +1                   
TAAACT ATACGC [HIPP]
[TIM]
[130]
  murQp1 2545733 murQ, murP 40 tgcgagtgtagactcaatgattcctttaagcctgtcaattcgggatatatgattccatacAtctgcaattatttgatcgta
                          -35                 -10           +1                   
TATATGATTCC TTAAGC [RS-EPT-CBR]
[TIM]
[131]
[2]
  murQp1 2545733 murQ, murP 40 tgcgagtgtagactcaatgattcctttaagcctgtcaattcgggatatatgattccatacAtctgcaattatttgatcgta
                         -35                    -10         +1                   
TATGAT TTTAAG [RS-EPT-CBR]
[TIM]
[131]
[2]
  murRp 2545793 murR 184 gcacatttccagcgtcgatacgcggtcaatttcagccgaggcggtgttcgagccttcagtAatcatcttttcaaattgcat
                             -35                  -10       +1                   
GAGCCT ATTTCA [TIM] [131]
  murRp 2545793 murR 184 gcacatttccagcgtcgatacgcggtcaatttcagccgaggcggtgttcgagccttcagtAatcatcttttcaaattgcat
                             -35             -10            +1                   
TGTTCGAGCCT ATTTCA [TIM] [131]
  mutSp 2857019 mutS 74 accagcatcaagaactcgccgttcgcttcttcccctgaaatgattaactccggtatcatgTgcgccttatgtgattacaac
                              -35                -10        +1                   
TCCGGTATCAT TTCCCC [TIM] [132]
  narUp2 1544163 narU 103 tctggctacttaatccccattctgcccccgcggttacgctttcttatctattctttcaatCagcacttcacccaattcatc
                           -35              -10             +1                   
TTATCTATTCT CCCGCG [HIPP] [133]
  nhaAp2 17317 nhaA, nhaR 172 tacttttcctaattaatccctcaggaatcctcaccttaagctatgattatctaggcttagGgtcactcgtgagcgcttaca
                              -35              -10          +1                   
TTATCTAGGCT CTCACC [TIM] [134]
  ompFp 987092 ompF 110 ctttatctttgtagcactttcacggtagcgaaacgttagtttgaatggaaagatgcctgcAgacacataaagacaccaaac
                         -35                     -10        +1                   
AAAGAT GTAGCG [RS-EPT-CBR]
[TIM]
[135]
[2]
  osmBp1 1343476 osmB 148 ctggttgataattaagactatttacctgttattaacactctcaagatataaaattattatCagcgatataacaggaagtca
                                -35               -10       +1                   
AAAATTATTAT TTAACA [TIM] [136]
[137]
  osmBp2 1343369 osmB 41 gcgcgagcagatttcacggaataatttcaccagacttattcttagctattatagttatagAgagcttacttccgtgaatca
                          -35                  -10          +1                   
TATTAT TTCACC [HIPP]
[TIM]
[136]
[138]
[137]
[139]
  osmBp2 1343369 osmB 41 gcgcgagcagatttcacggaataatttcaccagacttattcttagctattatagttatagAgagcttacttccgtgaatca
                         -35              -10               +1                   
TTAGCTATTAT TTTCAC [HIPP]
[TIM]
[136]
[138]
[137]
[139]
  osmCp2 1556606 osmC 19 attcggaatatcctgcttatcctcgtgctgtttctcacgtagtctataatttcctttttaAgcccacaggagagcaacaat
                       -35              -10                 +1                   
TAGTCTATAAT TCGTGC [HIPP]
[TIM]
[140]
[141]
[142]
[143]
  osmEp 1822283 osmE 27 aagcggagccgtttcgttcacgggcttgaaaaagcgcccaatgtattccaggcttatctaAcacgctgataaacaagagga
                                 -35                   -10  +1                   
TATCTA AGCGCC [HIPP]
[RS-EPT-CBR]
[TIM]
[TIM]
[144]
[140]
[145]
[146]
[147]
[2]
  osmEp 1822283 osmE 27 aagcggagccgtttcgttcacgggcttgaaaaagcgcccaatgtattccaggcttatctaAcacgctgataaacaagagga
                          -35               -10             +1                   
TATTCCAGGCT TTGAAA [HIPP]
[RS-EPT-CBR]
[TIM]
[TIM]
[144]
[140]
[145]
[146]
[147]
[2]
  osmFp 2219523 yehW, yehX, yehY, osmF 42 attctgcaactgaatccttccgctcaagctaaccccgccattatcaactatgcttttctcTtaattcgctgaaaacaacag
                         -35                -10             +1                   
TCAACTATGCT CAAGCT [RS-EPT-CBR]
[TIM]
[TIM]
[148]
[2]
  osmYp 4611153 osmY 243 ttgcttatgttttcgctgatatcccgagcggtttcaaaattgtgatctatatttaacaaaGtgatgacatttctgacggcg
                     -35                        -10         +1                   
TATATT ATCCCG [HIPP]
[TIM]
[TIM]
[140]
[138]
[149]
[150]
[151]
  osmYp 4611153 osmY 243 ttgcttatgttttcgctgatatcccgagcggtttcaaaattgtgatctatatttaacaaaGtgatgacatttctgacggcg
                       -35                 -10              +1                   
TGATCTATATT CCCGAG [HIPP]
[TIM]
[TIM]
[140]
[138]
[149]
[150]
[151]
  otsAp 1981651 otsA 39 catcatggcgactggcgggtgtgccggatgtctggagctggcttgaaatgataaccaccgCattacaacaaaaaagagaaa
                            -35              -10            +1                   
GAAATGATAAC ATGTCT [HIPP]
[TIM]
[152]
[153]
  otsBp 1982465 otsA, otsB 78 tttcccaccatagccaaccgccataacggttggctgttcttcgttgcaaatggcgaccccCgtcacactgtctatacttac
                              -35                 -10       +1                   
ATGGCGACCCC TTGGCT [HIPP]
[TIM]
[152]
[153]
  otsBp2 1982442 otsA, otsB 55 taacggttggctgttcttcgttgcaaatggcgacccccgtcacactgtctatacttacatGtctgtaaagcgcgttctgcg
                           -35               -10            +1                   
CTGTCTATACT ATGGCG [RS-EPT-CBR]
[TIM]
[154]
[153]
[155]
[2]
  oxyRp 4158457 oxyR 33 tgagcaattatcagtcagaatgcttgatagggataatcgttcattgctattctacctatcGccatgaactatcgtggcgat
                        -35                -10              +1                   
ATTGCTATTCT TTGATA [HIPP]
[TIM]
[156]
[157]
  oxyRp 4158457 oxyR 33 tgagcaattatcagtcagaatgcttgatagggataatcgttcattgctattctacctatcGccatgaactatcgtggcgat
                        -35                     -10         +1                   
TATTCT TTGATA [HIPP]
[TIM]
[156]
[157]
  patAp 3219458 patA 36 gtgtttatcccgattttcgcgatcgcagccggagtggcgcaatccctgcaatacttaaatCggtatcatgtgatacgcgag
                                   -35         -10          +1                   
TGCAA TGGCGC [AIPP]
[TIM]
[TIM]
[158]
  pcnBp3 159171 folK, pcnB 45 cgagtcggcaattgtaaattcaacattctcaaatgcgtcatgctgagctatgattagccgCtatttttttgtcctgaatga
                          -35                    -10        +1                   
TATGAT TTCTCA [HIPP]
[TIM]
[TIM]
[159]
[160]
[161]
  pcnBp3 159171 folK, pcnB 45 cgagtcggcaattgtaaattcaacattctcaaatgcgtcatgctgagctatgattagccgCtatttttttgtcctgaatga
                           -35              -10             +1                   
TGAGCTATGAT TCTCAA [HIPP]
[TIM]
[TIM]
[159]
[160]
[161]
  pcnBp4 159391 folK, pcnB 265 aagtgccagattacattcatctgccgctggcgcttaatccacaaggcgctaaactttccaAgcagaatcatgcgcctgcgt
                           -35               -10            +1                   
GGCGCTAAACT CTGGCG [TIM] [161]
  pdeRp 1346843 pdeR 101 tttttaactgactttcgtttgaaaactggcgtttttccaaaactggattacaaataaataTataaaaaaaacaatgcgttt
                          -35               -10             +1                   
TGGATTACAAA CTGGCG [HIPP]
[TIM]
[162]
  pdhRp 122034 pdhR, aceE, aceF, lpd 58 ttcatgatttcaatcaaaacctgtatggacataaggtgaatactttgttactttagcgtcAcagacatgaaattggtaaga
                          -35                    -10        +1                   
TACTTT TGGACA [HIPP]
[HTIM]
[RS-EPT-CBR]
[TIM]
[TIM]
[163]
[1]
[164]
[2]
  pdhRp 122034 pdhR, aceE, aceF, lpd 58 ttcatgatttcaatcaaaacctgtatggacataaggtgaatactttgttactttagcgtcAcagacatgaaattggtaaga
                        -35                 -10             +1                   
TTTGTTACTTT TATGGA [HIPP]
[HTIM]
[RS-EPT-CBR]
[TIM]
[TIM]
[163]
[1]
[164]
[2]
  pfkAp1 4107522 pfkA 30 tactatttgcacattcgttggatcacttcgatgtgcaagaagacttccggcaacagatttCattttgcattccaaagttca
                                        -10                 +1                   
AAGACTTCCGGC   [HTIM] [1]
  pfkAp2 4107474 pfkA 78 accgccatttggcctgacctgaatcaattcagcaggaagtgattgttatactatttgcacAttcgttggatcacttcgatg
                                              -10           +1                   
TTATACTA   [HIPP]
[HTIM]
[RS-EPT-CBR]
[165]
[166]
[53]
[1]
[2]
  pfkBp1 1806351 pfkB 19 ctccaataaatcatattgttaatttcttcactttccgctgattcggtgccagactgaaatCagcctataggaggaaatgat
                           -35               -10            +1                   
GGTGCCAGACT TTCACT [HIPP]
[TIM]
[167]
[168]
[20]
  pfkBp2 1806323 pfkB 47 atatttatctgcaaaattttaaataaagctccaataaatcatattgttaatttcttcactTtccgctgattcggtgccaga
                              -35                 -10       +1                   
ATTTCTTCACT TCCAAT [TIM] [20]
  pgip 4233722 pgi 36 acattacgctaacggcactaaaaccatcacatttttctgtgactggcgctacaatcttccAaagtcacaattctcaaaatc
                            -35              -10            +1                   
GGCGCTACAAT CACATT [HIPP]
[HTIM]
[TIM]
[169]
[1]
  pgip 4233722 pgi 36 acattacgctaacggcactaaaaccatcacatttttctgtgactggcgctacaatcttccAaagtcacaattctcaaaatc
                          -35                     -10       +1                   
TACAAT ATCACA [HIPP]
[HTIM]
[TIM]
[169]
[1]
  poxBp 911076 poxB 27 ttagtgcctcctttctctcccatcccttccccctccgtcagatgaactaaacttgttaccGttatcacattcaggagatgg
                           -35                  -10         +1                   
TAAACT TTCCCC [HTIM]
[RS-EPT-CBR]
[TIM]
[TIM]
[170]
[1]
[2]
[150]
  poxBp 911076 poxB 27 ttagtgcctcctttctctcccatcccttccccctccgtcagatgaactaaacttgttaccGttatcacattcaggagatgg
                       -35                 -10              +1                   
TGAACTAAACT TCCCTT [HTIM]
[RS-EPT-CBR]
[TIM]
[TIM]
[170]
[1]
[2]
[150]
  ppkp 2622977 ppk, ppx 67 attcacctgtaaatcgcaagctccagcagtttttttcccccttttctggcatagttggacAtctgccaatattgctcgcca
                                                  -10       +1                   
CATAGT   [HTIM] [15]
  pqiAp1 1011666 pqiA, pqiB, pqiC 335 ccgcggcaaaagcagaaactgtaaaacgcagcagtagcaaactaagctataaattgcagcGcgaactggagcagctaccgc
                   -35                -10                   +1                   
CAAACTAAGCT CTGTAA [HIPP]
[TIM]
[TIM]
[171]
[172]
  pqiAp1 1011666 pqiA, pqiB, pqiC 335 ccgcggcaaaagcagaaactgtaaaacgcagcagtagcaaactaagctataaattgcagcGcgaactggagcagctaccgc
                     -35                        -10         +1                   
TATAAA GTAAAA [HIPP]
[TIM]
[TIM]
[171]
[172]
  pqiAp2 1011659 pqiA, pqiB, pqiC 342 gaagccgccgcggcaaaagcagaaactgtaaaacgcagcagtagcaaactaagctataaaTtgcagcgcgaactggagcag
                          -35                -10            +1                   
CAAACTAAGCT CTGTAA [HIPP]
[TIM]
[172]
  pqiAp2 1011659 pqiA, pqiB, pqiC 342 gaagccgccgcggcaaaagcagaaactgtaaaacgcagcagtagcaaactaagctataaaTtgcagcgcgaactggagcag
                          -35                     -10       +1                   
TAAGCT CTGTAA [HIPP]
[TIM]
[172]
  proPp2 4330407 proP 95 actggtttgattgtacattccttaaccggagggtgtaagcaaacccgctacgcttgttacAgagattgcatcctgcaattc
                          -35               -10             +1                   
CCCGCTACGCT CCGGAG [HIPP]
[TIM]
[173]
[174]
[175]
  proVp1 2804563 proV, proW, proX 252 taattcccgccaaatagctttttatcacgcaaataatttgtggtgatctacactgatactCtgttgcattattcgcctgaa
                      -35                        -10        +1                   
TACACT TTATCA [TIM] [176]
[177]
  proVp1 2804563 proV, proW, proX 252 taattcccgccaaatagctttttatcacgcaaataatttgtggtgatctacactgatactCtgttgcattattcgcctgaa
                          -35               -10             +1                   
TGATCTACACT CACGCA [TIM] [176]
[177]
  pstBp1 3908556 phoU, pstB 190 ttaccctgtgcgtactgctgctgaacattctggcgcgcgttgtttttgcgaagaataaacAcggttgatattgctgacacg
                            -35                    -10      +1                   
AAGAAT TTCTGG [HIPP]
[IMP]
[TIM]
[178]
  pstBp1 3908556 phoU, pstB 190 ttaccctgtgcgtactgctgctgaacattctggcgcgcgttgtttttgcgaagaataaacAcggttgatattgctgacacg
                              -35             -10           +1                   
TTGCGAAGAAT CTGGCG [HIPP]
[IMP]
[TIM]
[178]
  pstCp 3910542 phoU, pstB, pstA, pstC 144 cggggctaaacaggcgaacgacctggattacgccagcctgccggatagtgtagttgaacaGgttcgcgctgcgtggaagac
                       -35                    -10           +1                   
TAGTGT CTGGAT [HIPP]
[IMP]
[TIM]
[178]
  pstCp 3910542 phoU, pstB, pstA, pstC 144 cggggctaaacaggcgaacgacctggattacgccagcctgccggatagtgtagttgaacaGgttcgcgctgcgtggaagac
                       -35             -10                  +1                   
TGCCGGATAGT CTGGAT [HIPP]
[IMP]
[TIM]
[178]
  pstSp 3911568 phoU, pstB, pstA, pstC, pstS 43 tcataaaactgtcatattccttacatataactgtcacctgtttgtcctattttgcttctcGtagccaacaaacaatgcttt
                     -35                        -10         +1                   
TATTTT TTACAT [HIPP]
[TIM]
[TIM]
[179]
[180]
[181]
[182]
[183]
  pstSp 3911568 phoU, pstB, pstA, pstC, pstS 43 tcataaaactgtcatattccttacatataactgtcacctgtttgtcctattttgcttctcGtagccaacaaacaatgcttt
                        -35                -10              +1                   
TGTCCTATTTT CATATA [HIPP]
[TIM]
[TIM]
[179]
[180]
[181]
[182]
[183]
  puuAp 1360968 puuP, ymjE, puuA 60 tcatttttgcaaactcaatttaacatttgacaaacatttagtttgcatacagattcgaatGgtggtcattatattttacgc
                           -35                  -10         +1                   
TACAGA TTGACA [AIPP]
[IMP]
[TIM]
[57]
[184]
  puuCp 1362728 puuC, puuB, puuE 15 catacggcccggggatctctgcgccctgacgttcacaaactgcatatatctgatagacgtGaaacaggagtcataatgaat
                                                 -10        +1                   
TCTGAT   [HTIM] [15]
  puuDp 1361052 puuD, puuR, puuC, puuB, puuE 68 atgtttgtcaaatgttaaattgagtttgcaaaaatgaaaacccactgctagattgaaaaaAtattgaacataaaggtcatt
                          -35                    -10        +1                   
TAGATT TTGCAA [HTIM]
[IMP]
[TIM]
[53]
[184]
  pykAp1 1937544 pykA 105 ttgataagcagttacttaatttaagtgacgatcgctaaaaacgactgtcactgtcctaatCttatacgacatccgaatgag
                                                -10         +1                   
TCACTGTC   [HTIM]
[RS-EPT-CBR]
[53]
[1]
[2]
  pykAp2 1937494 pykA 155 attcagagataacttgaagcgggtcaaagaagcgctgaaggaatcgcgttttgataagcaGttacttaatttaagtgacga
                                                 -10        +1                   
TTTTGATA   [HTIM]
[RS-EPT-CBR]
[53]
[1]
[2]
  pykFp1 1755663 pykF 35 gcaccaccactttcgtaataccggattcgctttccggcagtgcgcccagaaagcaagtttCtcccatccttctcaacttaa
                                              -10           +1                   
CCAGAAAG   [HTIM] [53]
[1]
  pykFp2 1755600 pykF 98 ggctgagacacaagcacacattcctctgcacgctttttcgatgtcacctatccttagagcGaggcaccaccactttcgtaa
                                                -10         +1                   
CTATCCTT   [HTIM]
[RS-EPT-CBR]
[53]
[1]
[2]
  ravAp 3931128 viaA, ravA 35 aaataccccccctttgagactattttagccaccagcaagaaacgtctatactcgcaatttAcgcagaacttttgacgaaag
                                              -10           +1                   
CTATACT   [HTIM] [53]
[185]
  rhaSp 4097711 rhaS, rhaR 25 tacgtggttttccgtcgaaaatttaaggtaagaacctgacctcgtgattactatttcgccGtgttgacgacatcaggaggc
                         -35                -10             +1                   
GTGATTACTAT AAGGTA [TIM] [186]
[187]
[188]
[189]
  rhaSp 4097711 rhaS, rhaR 25 tacgtggttttccgtcgaaaatttaaggtaagaacctgacctcgtgattactatttcgccGtgttgacgacatcaggaggc
                      -35                        -10        +1                   
TACTAT TTTAAG [TIM] [186]
[187]
[188]
[189]
  rpoEp4 2710230 rseC, rseB, rseA, rpoE, rseD 66 ttactggctggtggaggattaggtggtgaaataaaaaggccgttgggttactcttcaggcAgttaaatgggcatttctaca
                          -35                    -10        +1                   
TACTCT GTGAAA [RS-EPT-CBR]
[TIM]
[190]
[2]
  rpoHp1 3601003 rpoH 220 acggtacaacatttacgccactttacgcctgaataataaaagcgtgttatactctttcccTgcaatgggttccgtagcagg
                         -35               -10              +1                   
CGTGTTATACT ACGCCT [HIPP]
[TIM]
[TIM]
[191]
[192]
[193]
[194]
[195]
  rpoHp1 3601003 rpoH 220 acggtacaacatttacgccactttacgcctgaataataaaagcgtgttatactctttcccTgcaatgggttccgtagcagg
                      -35                       -10         +1                   
TATACT TTTACG [HIPP]
[TIM]
[TIM]
[191]
[192]
[193]
[194]
[195]
  rraAp 4119358 rraA 28 caaatatcaattaacaattgatgattttgccaacagcccacatagcgcgatatactgaaaAttctcgcagcaactgaatgt
                           -35              -10             +1                   
AGCGCGATATA TTGCCA [HTIM]
[RS-EPT-CBR]
[TIM]
[TIM]
[53]
[2]
[196]
  rsdp1 4196954 rsd 146 gatcgaaatttgccgcttcgccatatggcaattctcccttcggcaaccataatttttgttCatggctgacgacccaccagc
                         -35               -10              +1                   
GCAACCATAAT ATGGCA [HIPP]
[TIM]
[197]
  rssAp 1289106 rssA, rssB 139 atcaggtgcaaccttttcaccagacacataagggtggcaacataggctatactcgacagcActaccacagggacaaagctg
                         -35               -10              +1                   
TAGGCTATACT CACATA [IMP]
[RS-EPT-CBR]
[TIM]
[TIM]
[198]
[199]
[2]
  rssBp 1290220 rssB 22 ttatctacacttaagttaattctgacaggcgcaggtggcaatagcatgccactattgagtAaagccagtcaggggagagaa
                          -35                -10            +1                   
CATGCCACTAT CAGGCG [HIPP]
[TIM]
[199]
  ryjAp 4278066 ryjA 0 tgcggttaaaaagtatacttttacactggcgaagaaacgtcggtgacatacaattaaagcAtcaacaccaaccggaacctc
                          -35                    -10        +1                   
TACAAT CTGGCG [TIM] [200]
  sdsNp2 1996880 sdsN 41 ccttatcctgcatagtaaaccgcaacgcccctgagagtgagtatcatttataatgataatTcaaactatcacataaataag
                          -35                    -10        +1                   
TATAAT CGCCCC [TIM] [201]
  sdsRp 1923207 pphA, sdsR 0 tttttattgaccattttgcacgcaaactggaaaacctggcgtcgtcatctattcttaaagGgcaaggcaactaagcctgca
                           -35                    -10       +1                   
TATTCT CTGGAA [HIPP]
[IMP]
[TIM]
[202]
[201]
[203]
  sgrSp 77367 sgrS, sgrT, setA 0 gaactcctgtgcaaaagacagcaattttattttccctatattaagtcaataattcctaacGatgaagcaagggggtgcccc
                          -35              -10              +1                   
AAGTCAATAAT TTTATT [AIPP]
[TIM]
[204]
  sgrSp 77367 sgrS, sgrT, setA 0 gaactcctgtgcaaaagacagcaattttattttccctatattaagtcaataattcctaacGatgaagcaagggggtgcccc
                          -35                   -10         +1                   
AATAAT TTTATT [AIPP]
[TIM]
[204]
  sodCp 1724679 sodC 24 gtaagcacttttaggaatagccgccgttcaaaaatgtgtcactggtttacacttattcagGaatgcacaatgaacggaggt
                       -35                 -10              +1                   
TGGTTTACACT GCCGTT [HTIM]
[TIM]
[TIM]
[205]
[53]
  sohBp1 1329284 sohB 48 aaatggatactttgtcatactttcgctgcaataacatctctgcgagacggcttaacatgcCtgttgtaaactgtgagccaa
                               -35                   -10    +1                   
TAACAT ATAACA [HIPP] [129]
  sohBp1 1329284 sohB 48 aaatggatactttgtcatactttcgctgcaataacatctctgcgagacggcttaacatgcCtgttgtaaactgtgagccaa
                      -35              -10                  +1                   
TCTGCGAGACG TTCGCT [HIPP] [129]
  speBp 3083946 speB 149 gaactgcaacaacagttccttgaagagttcgaggcaggtttgtacggttatacttatcttGaagatgagtaagtcctgtgt
                            -35             -10             +1                   
ACGGTTATACT TTCGAG [HIPP]
[TIM]
[TIM]
[206]
  speCp 3109175 speC 20 accagtttgacccatatctcatggggcagggttttccaccttgtccggtattcttacttcCccgaaacgggtttgcgctta
                           -35              -10             +1                   
TCCGGTATTCT CAGGGT [AIPP]
[HIPP]
[207]
[58]
  srap 1556046 sra 83 acgatcaattatgtggtcagtggccagcaccctacgctttaaggtgctatgcttgatcggCaacctaatttaggggtttag
                        -35                -10              +1                   
GGTGCTATGCT CCAGCA [TIM]
[TIM]
[208]
[20]
  ssrSp2 3055759 ssrS, fau 224 gcagcggacgatctgaaccaacggttgcaagatctgaaagaacgcactagagtcacaaatActgaacagttggtcttcatt
                         -35               -10              +1                   
CGCACTAGAGT TTGCAA [AIPP]
[RS-EPT-CBR]
[TIM]
[209]
[210]
[2]
  ssrSp2 3055759 ssrS, fau 224 gcagcggacgatctgaaccaacggttgcaagatctgaaagaacgcactagagtcacaaatActgaacagttggtcttcatt
                         -35                    -10         +1                   
TAGAGT TTGCAA [AIPP]
[RS-EPT-CBR]
[TIM]
[209]
[210]
[2]
  sucAp 758586 sucA, sucB, sucC, sucD 120 cgtaacaaagaaatgcaggaaatctttaaaaactgcccctgacactaagacagtttttaaAggttccttcgcgagccacta
                         -35             -10                +1                   
GACACTAAGAC TTTAAA [TIM] [163]
[3]
  talAp1 2578588 talA, tktB 78 ctataacactgatgttacctgcttaatccagcaataccatgcctgtctgctatgctttttTgatgcgtttagcgaaatttc
                             -35              -10           +1                   
TCTGCTATGCT CAGCAA [TIM] [20]
  talAp2 2578570 talA, tktB 96 aatgttttggtaataatcctataacactgatgttacctgcttaatccagcaataccatgcCtgtctgctatgcttttttga
                              -35             -10           +1                   
CCAGCAATACC ATGTTA [TIM] [20]
  tamp 1607221 tam 125 gcctataaagatgaagacgcagtggcgttccataaaaccacgccccactacaaaacctgtGtcgcgaaactggaatcttta
                                                -10         +1                   
CTACAAA   [HTIM]
[IEP]
[15]
[65]
  tktBp 2579308 tktB 328 gtggtggaagaagatccgggcgttaaatcggtgcgcaatatctacgactactataagcaaCaccactatgaaaccattgtg
                           -35              -10             +1                   
ACGACTACTAT ATCGGT [HIPP] [211]
  tolCp4 3178074 tolC, ygiB, ygiC 41 ggcacgtaacgccaaccttttgcggtagcggcttctgctagaatccgcaataattttacaGtttgatcgcgctaaatactg
                          -35               -10             +1                   
TCCGCAATAAT TAGCGG [AIPP]
[RS-EPT-CBR]
[TIM]
[58]
[2]
[212]
  topAp5 1330789 topA 259 cacgctggtggcaagagcgccttactggcaactttggattttgcatgctaataaagttgcGtatcggattttatcaggtac
                         -35                -10             +1                   
CATGCTAATAA CTGGCA [HIPP]
[TIM]
[213]
  topAp5 1330789 topA 259 cacgctggtggcaagagcgccttactggcaactttggattttgcatgctaataaagttgcGtatcggattttatcaggtac
                         -35                     -10        +1                   
TAATAA CTGGCA [HIPP]
[TIM]
[213]
  tpiAp2 4111569 tpiA 62 ggtttgaataaatgacaaaaagcaaagcctttgtgccgatgaatctctatactgtttcacAgacctgctgccctgcggggc
                                               -10          +1                   
CTATACTG   [HTIM]
[RS-EPT-CBR]
[53]
[1]
[2]
  treAp 1247425 treA 49 tgacagttcgcagaatgagatttcgatcatgcagctagtgcgatcctgaactaaggttttCtgatacttgaataccgtttt
                             -35               -10          +1                   
TGAACTAAGGT ATGCAG [HIPP]
[IMP]
[TIM]
[214]
  treFp 3669551 treF 41 aacgtgatccaccgcacgctttgtcgcccaccaggcggagcgaatgactacccttaaagaAaagccgataattagcgacga
                                             -10            +1                   
TGACTACCCT   [HTIM] [15]
  uspBp 3639848 uspB 128 gaatatattgatagtggttaaccttctggaaaaaaaacaacctgatctcctacactatctAtagagccgctcgtatgttgg
                          -35                 -10           +1                   
TCTCCTACACT CTGGAA [HIPP]
[TIM]
[TIM]
[215]
[35]
  wrbAp 1067758 yccJ, wrbA 50 ataaatcaaataagtggttgtgaaatttgcactctgaaaaggacgtcttatctttaaataAgtggtagcgaatcgctacgg
                           -35                   -10        +1                   
TATCTTT TTGCAC [HTIM]
[RS-EPT-CBR]
[53]
[2]
  xapAp 2524910 xapB, xapA 32 tattgaatgcgtgagaaaagtgtattggtaagagccgggacaacctcgctataaaaaggcGttagattccaccctacagaa
                         -35                 -10            +1                   
CTCGCTATAAA TTGGTA [HIPP]
[TIM]
[216]
  xapAp 2524910 xapB, xapA 32 tattgaatgcgtgagaaaagtgtattggtaagagccgggacaacctcgctataaaaaggcGttagattccaccctacagaa
                         -35                      -10       +1                   
TATAAA TTGGTA [HIPP]
[TIM]
[216]
  xthAp 1832399 xthA 29 atcgatcaaatcacttaacaacaggcggtaagcaacgcgaaattctgctaccatccacgcActctttatctgaataaatgg
                         -35                -10             +1                   
TCTGCTACCAT GCGGTA [HIPP]
[RS-EPT-CBR]
[TIM]
[TIM]
[2]
[217]
  yabIp 71271 yabI 80 gtttcgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataattggtAacgaatcagacaattgacgg
                                                -10         +1                   
TGTCATAAT   [HTIM]
[RS-EPT-CBR]
[TIM]
[53]
[2]
[218]
  yadVp2 156224 htrE, yadV 23 aattgattgaatgaatatacagggaataataatttctattttatattattccctgttttaAttaactctatcagggatggt
                      -35                 -10               +1                   
TATATTATTCC GGGAAT [HIPP]
[TIM]
[219]
  ybgAp1 738980 ybgA, phr 21 gtcctgctacaacaggattaacttcacaaatatcatttctcaacgtctacacttactcctGtaaaccgctcaggagcagta
                       -35                 -10              +1                   
ACGTCTACACT TTCACA [RS-EPT-CBR]
[TIM]
[20]
[220]
[2]
  ybgAp2 738920 ybgA, phr 81 cagctatggttagaaactacctgacgtcagtccttgcggggagcaggctttcgtaaatttGtcctgctacaacaggattaa
                                  -35             -10       +1                   
TTCGTAAATTT TTGCGG [TIM] [20]
  ybiIp6 838484 ybiI 28 tggtcggagatctgatgcttgaactgcccgagttcgtccctggattagctacacttaactGtacaagtattgatatgggga
                                                -10         +1                   
GCTACACT   [ICWHO] [58]
[38]
  ybjPp 904523 ybjP 56 ccttgtttgctaagccttcgatctcaaaagcattatcagactgatacgctattattgaaaGgatatcattattatcgtaga
                         -35                 -10            +1                   
TACGCTATTAT CAAAAG [TIM] [20]
  ycgZp 1215752 ycgZ, ymgA, ariR, ymgC 37 gcaaaaaattaatttatcattctgtacacatatttcgtacaagtttgctattgttacttcActtaacattgattaacattt
                         -35                -10             +1                   
TTTGCTATTGT TACACA [HIPP]
[TIM]
[57]
[221]
  yciGp 1316092 yciE, yciF, yciG 57 ccctctatcttctcgttgcgcttaatttgactaattctcattagcgactaattttaatgaGtgtcgacacacaacactcat
                           -35              -10             +1                   
GCGACTAATTT TTGACT [AIPP]
[HIPP]
[58]
[222]
  yciTp 1344510 yciT 164 gatattgtgttagatatccttgtggcaggcgattaccactctgcgatccataatctcgagAtacttaaagcagaactcttg
                                                -10         +1                   
CCATAAT   [HTIM] [15]
  yciZp 1344638 yciT, yciZ 29 gataattagccgttgctgttaaacacttctcttttagcggcaatttttgcattattcattTtcccccttttgctataagga
                               -35              -10         +1                   
TGCATTATTCA CTTTTA [TIM] [223]
  ydbDp 1475066 ydbD 78 ggagaatatggctgctgaaaaattgcatctttctgaggaagtgttgtctacgttggatggTatttcgcgagaataacgaat
                          -35               -10             +1                   
TTGTCTACGTT CATCTT [AIPP]
[IEP]
[57]
[65]
  ydbKp4 1440846 ompN, ydbK 62 cgctgatgtgggggacacaaaagcgaaaatgcagaagaaagccatttgctaaaattgaaaGattactactgggcgcgcagc
                                                  -10       +1                   
TAAAAT   [ICWHO] [58]
[38]
  ydcSp1 1511599 ydcS, ydcT, ydcU, ydcV, patD 55 gaataaattttctcaggggcgaaggtgtgcctgcaagccgccgtctatggttaaacaaggAgatatttttacggcacggcg
                                            -10             +1                   
TCTATGGTTAA   [HIPP] [224]
  yddGp 1547205 yddG 36 gcggtagaaaaacgcaccactgcctgacaggccagttaaaaaaatgctataaaattcagcTtaatttttaacggcaagaga
                        -35                -10              +1                   
AATGCTATAAA CTGACA [TIM] [225]
  ydhYp 1754642 ydhT, ydhU, ydhX, ydhW, ydhV, ydhY 165 tgtaattttaattgataacgatcaatgttaagggctcagaataatcacattattttttctCctaaccataaaggattagtt
                            -35               -10           +1                   
CACATTATTTT TTAAGG [TIM] [226]
  yeiLp 2255290 yeiL 65 aaagaaaattcgaccgggccgatgattgaatcttaacaacagcgtacgtatgctaaatatGagaaatctcatagcggataa
                                 -35             -10        +1                   
TATGCTAAATA TTAACA [HIPP]
[TIM]
[227]
  yffOp 2562053 yffO, yffP 58 acgccaaaattagcgctgaattaatgggtaattattgcggtttttgtcaattttcaacctCaattcttgcgaaaaatggca
                                             -10            +1                   
TGTCAATTT   [HTIM] [15]
  yggEp1 3068126 yggE 46 ccttgttcagttaggcgctatctgatggaaaaataaaacagaggcgctaagcttgcctccAgaggtcctgaattttgggca
                         -35               -10              +1                   
GGCGCTAAGCT ATGGAA [RS-EPT-CBR]
[TIM]
[20]
[2]
  yggEp2 3068185 yggE 105 atgtgttatgtggtttattgccttgcagctggcgagagacggtattgctcatgcacaagcCttgttcagttaggcgctatc
                          -35                -10            +1                   
TTGCTCATGCA CAGCTG [TIM] [20]
  yhfGp 3491648 pabA, fic, yhfG 28 caatcttgcccgcgcttctgctctcccggcgtaacccggatttgccgcttatacttgtggCaaatggacacgttcagggag
                                                  -10       +1                   
TATACT   [CV(RPF/RS-EPT-CBR)]
[CV(RPF/TIM)]
[HIPP]
[IEP]
[IMP]
[RPF]
[RS-EPT-CBR]
[TIM]
[140]
[228]
[2]
[229]
[230]
  yhiMp 3634743 yhiM 98 tggccttttgaacgctgaaaagtagcgctctgcaaagtaaaccccgctatagttatgctaTgcatttgtctttaatgatat
                       -35                 -10              +1                   
CCCGCTATAGT TAGCGC [AIPP] [57]
[31]
  yhjGp 3678412 yhjG 62 tttcacgcccggcaccgatagaaacgctgaatacggcggttctggcgctataagctgcctCattttccgcctggctggact
                                                -10         +1                   
CTATAAG   [HTIM]
[IEP]
[15]
[65]
  yiaGp 3719431 yiaG 47 agccagagcatgccctgacttcaccccgctgtgtctgcttttcccgactattcttaatgaGcttcgatgcaattcacgatc
                          -35               -10             +1                   
CCGACTATTCT CCGCTG [TIM] [20]
  yihGp 4046652 yihG 50 attttttctaatgtggatagatatgaattatttttctccttaaggatcatccgttatttgGgtcgttttctgctaaaatct
                       -35                 -10              +1                   
AGGATCATCCG ATGAAT [HIPP]
[TIM]
[231]
  yjcCp 4275418 pdeC 53 atttcaaatcaggcaaaagtgctatttataccgtaagatttatctaaagacgtcggtaccCagggttttcaccttgcaatg
    [HTIM] [232]
  yjiYp 4591367 btsT 88 aaataaccactcagttatttaccttactttacgcgcgcgtaactctggcaacatcactacAggatagcggtcaatttacct
                           -35                -10           +1                   
TGGCAACAT CTTTACG [TIM] [233]
  ynfBp 1655709 ynfB, speG 99 aaaatagtaacgttgttttaatcatctttgtctcttattgacatcatgtatagttataggGcgacataatatcatcaatat
    [HTIM] [53]
[31]
  ynfEp 1658003 ynfE, ynfF, ynfG, ynfH, dmsD 66 tcatacccttctattgatatggattaataattcttaacccaaaatgggtagactccctctAttgttagcgcgctaaatatt
                        -35                 -10             +1                   
ATGGGTAGACT TTAATA [AIPP]
[RPF]
[234]
[235]
  ynfEp 1658003 ynfE, ynfF, ynfG, ynfH, dmsD 66 tcatacccttctattgatatggattaataattcttaacccaaaatgggtagactccctctAttgttagcgcgctaaatatt
                        -35                      -10        +1                   
TAGACT TTAATA [AIPP]
[RPF]
[234]
[235]
  ytfKp 4439511 ytfK 76 ctttaggtaaaaaaagttatacgcggtggaaacattgcccggatagtctatagtcactaaGcattaaaatttgcgcctcat
                          -35               -10             +1                   
TAGTCTATAGT GTGGAA [RS-EPT-CBR]
[TIM]
[20]
[2]
  znuAp 1942661 znuA 78 gaggacgcggcgttggccaaaagaaaccgagacattttccagggaaaccagacttgtcatGttaattttagtcttgcagta
                           -35              -10             +1                   
GAAACCAGACT CCGAGA [AIPP] [58]
Evidence: [HTIM] High-throughput transcription initiation mapping
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates
[TIM] Transcription initiation mapping
[HIPP] Human inference of promoter position
[AIPP] Automated inference of promoter position
[IMP] Inferred from mutant phenotype
[CV(RPF/RS-EPT-CBR)] cross validation(RPF/RS-EPT-CBR)
[RPF] RNA polymerase footprinting
[CV(RPF/TIM)] cross validation(RPF/TIM)
[NAS] Non-traceable author statement
[ICA] Inferred by computational analysis
[IEP] Inferred from expression pattern
[MSI] Mapping of signal intensities
[IHBCE] Inferred by a human based on computational evidence
[ICWHO] Inferred computationally without human oversight
[TAS] Traceable author statement


Reference(s)    

 [1] Olvera L., Mendoza-Vargas A., Flores N., Olvera M., Sigala JC., Gosset G., Morett E., Bolivar F., 2009, Transcription analysis of central metabolism genes in Escherichia coli. Possible roles of sigma38 in their expression, as a response to carbon limitation., PLoS One 4(10):e7466

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [3] Spencer ME., Guest JR., 1985, Transcription analysis of the sucAB, aceEF and lpd genes of Escherichia coli., Mol Gen Genet 200(1):145-54

 [4] Cunningham L., Gruer MJ., Guest JR., 1997, Transcriptional regulation of the aconitase genes (acnA and acnB) of Escherichia coli., Microbiology 143 ( Pt 12):3795-805

 [5] Beatty CM., Browning DF., Busby SJ., Wolfe AJ., 2003, Cyclic AMP receptor protein-dependent activation of the Escherichia coli acsP2 promoter by a synergistic class III mechanism., J Bacteriol 185(17):5148-57

 [6] Kumari S., Simel EJ., Wolfe AJ., 2000, sigma(70) is the principal sigma factor responsible for transcription of acs, which encodes acetyl coenzyme A synthetase in Escherichia coli., J Bacteriol 182(2):551-4

 [7] Nakabeppu Y., Sekiguchi M., 1986, Regulatory mechanisms for induction of synthesis of repair enzymes in response to alkylating agents: ada protein acts as a transcriptional regulator., Proc Natl Acad Sci U S A 83(17):6297-301

 [8] Aristarkhov A., Mikulskis A., Belasco JG., Lin EC., 1996, Translation of the adhE transcript to produce ethanol dehydrogenase requires RNase III cleavage in Escherichia coli., J Bacteriol 178(14):4327-32

 [9] Membrillo-Hernandez J., Lin EC., 1999, Regulation of expression of the adhE gene, encoding ethanol oxidoreductase in Escherichia coli: transcription from a downstream promoter and regulation by fnr and RpoS., J Bacteriol 181(24):7571-9

 [10] Brombacher E., Dorel C., Zehnder AJ., Landini P., 2003, The curli biosynthesis regulator CsgD co-ordinates the expression of both positive and negative determinants for biofilm formation in Escherichia coli., Microbiology 149(Pt 10):2847-57

 [11] Weber H., Pesavento C., Possling A., Tischendorf G., Hengge R., 2006, Cyclic-di-GMP-mediated signalling within the sigma network of Escherichia coli., Mol Microbiol 62(4):1014-34

 [12] Landini P., Bown JA., Volkert MR., Busby SJ., 1998, Ada protein-RNA polymerase sigma subunit interaction and alpha subunit-promoter DNA interaction are necessary at different steps in transcription initiation at the Escherichia coli Ada and aidB promoters., J Biol Chem 273(21):13307-12

 [13] Landini P., Hajec LI., Nguyen LH., Burgess RR., Volkert MR., 1996, The leucine-responsive regulatory protein (Lrp) acts as a specific repressor for sigma s-dependent transcription of the Escherichia coli aidB gene., Mol Microbiol 20(5):947-55

 [14] Landini P., Hajec LI., Volkert MR., 1994, Structure and transcriptional regulation of the Escherichia coli adaptive response gene aidB., J Bacteriol 176(21):6583-9

 [15] Maciag A., Peano C., Pietrelli A., Egli T., De Bellis G., Landini P., 2011, In vitro transcription profiling of the σS subunit of bacterial RNA polymerase: re-definition of the σS regulon and identification of σS-specific promoter sequence elements., Nucleic Acids Res 39(13):5338-55

 [16] Volkert MR., Hajec LI., Matijasevic Z., Fang FC., Prince R., 1994, Induction of the Escherichia coli aidB gene under oxygen-limiting conditions requires a functional rpoS (katF) gene., J Bacteriol 176(24):7638-45

 [17] Xu J., Johnson RC., 1995, aldB, an RpoS-dependent gene in Escherichia coli encoding an aldehyde dehydrogenase that is repressed by Fis and activated by Crp., J Bacteriol 177(11):3166-75

 [18] Lai CF., Ripperger J., Wang Y., Kim H., Hawley RB., Baumann H., 1999, The STAT3-independent signaling pathway by glycoprotein 130 in hepatic cells., J Biol Chem 274(12):7793-802

 [19] Landini P., Busby SJ., 1999, The Escherichia coli Ada protein can interact with two distinct determinants in the sigma70 subunit of RNA polymerase according to promoter architecture: identification of the target of Ada activation at the alkA promoter., J Bacteriol 181(5):1524-9

 [20] Lacour S., Landini P., 2004, SigmaS-dependent gene expression at the onset of stationary phase in Escherichia coli: function of sigmaS-dependent genes and identification of their promoter sequences., J Bacteriol 186(21):7186-95

 [21] Atlung T., Brondsted L., 1994, Role of the transcriptional activator AppY in regulation of the cyx appA operon of Escherichia coli by anaerobiosis, phosphate starvation, and growth phase., J Bacteriol 176(17):5414-22

 [22] Atlung T., Knudsen K., Heerfordt L., Brondsted L., 1997, Effects of sigmaS and the transcriptional activator AppY on induction of the Escherichia coli hya and cbdAB-appA operons in response to carbon and phosphate starvation., J Bacteriol 179(7):2141-6

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