A collection of distributions of the different biological objects encoded in RegulonDB.
Transcriptional Regulatory Network
Different graphic representations (TF-gene, gene-gene, TF-TF, etc.) for the regulatory network of E.coli K12.
Internal sensing machinery directs the activity of the regulatory network in Escherichia coli.
To display, within a selected region of the genome, other objects contained in RegulonDB or added by the user.
Tracks (JBrowse) for Shigella flexneri 5a str. M90T
To display multiple tracks of different datasets using JBrowse.
TF PWMs Browser
The browser allows the navigation through each transcription factors and the distributions that support the quality of PWMs.
Clustering of PWMs
The browser to see the collection of PWMs clustered by their similarity, given the high similarity of motifs of proteins of the same family.
TF Family Browser
The repertoire of TFs where 184 are experimentally described and 120 are predictions. These TFs are classified in different evolutionary families based on PFAM, CDD, and Superfamily annotation.
RegulonDB Web Services
External Tools for Data Analysis
Gene Context Tool
To visualize the genomic context of a gene or a group of genes and their orthologous relationships within bacterial genomes.
Gene Expression Analysis Tools
GETools is a computational environment to analyze the transcriptional regulation of gene expression experiments in E.coli.
Any suggestion / help?
We will appreciate your comments to the RegulonDB Team HERE