RegulonDB Summary of evolutionary conservation

Summary of evolutionary conservation of SoxS gene regulated (first gene of a TU) interactions

Evolutionary conservation in RegulonDB is limited to gammaproteobacteria. Conservation of a regulatory interaction, i.e. a TF regulating a target gene, is inferred from the overrepresentation of TFBSs in upstream regions of the orthologous target genes. We searched for TFBS conservation only in those genomes with an ortholog for the TF and for the regulated gene. Orthologs were selected based on a bidirectional best-hit procedure using RSAT tools package. Overrepresentation is calculated based on the binomial distribution; the binomial significance is shown in following table as significance of conservation.

First Gene Significance of conservation (nd) Footprint conservation
acnA 1.97 (Below threshold)
acrA 0 (Below threshold)
fldA 5.39
fldB 0.65 (Below threshold)
fpr 12.85
fumC 8.36
inaA 2.07 (Below threshold)
marR 19.52
micF nd
nfo 0 (Below threshold)
nfsB 0 (Below threshold)
pgi 2.07 (Below threshold)
poxB 0.08 (Below threshold)
pqiA 0 (Below threshold)
ptsG 0 (Below threshold)
ribA 5.07
sodA 0 (Below threshold)
soxS 0 (Below threshold)
tolC 16.49
uof nd
waaY nd
ybjC 1.46 (Below threshold)
zinT 0 (Below threshold)
zwf 0 (Below threshold)