RegulonDB

Gene
Name:	osmE
Synonym(s):	ECK1737, EG10044, anr, b1739
Genome position(nucleotides):	1821918 <-- 1822256 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	49.56
External database links:

ASAP:	ABE-0005799
CGSC:	36628
ECHOBASE:	EB0042
ECOLIHUB:	osmE
OU-MICROARRAY:	b1739
STRING:	511145.b1739
COLOMBOS:	osmE

Product

Name:

osmotically-inducible lipoprotein OsmE

Synonym(s):

Anr, OsmE

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

inner membrane

Molecular weight:

12.021

Isoelectric point:

8.039

Motif(s):

Type	Positions	Sequence
	21 -> 112	CTAYDRTKDQFVQPVVKDVKKGMSRAQVAQIAGKPSSEVSMIHARGTCQTYILGQRDGKAETYFVALDDTGHVINSGYQTCAEYDTDPQAAK
	1 -> 20	MNKNMAGILSAAAVLTMLAG
	33 -> 96	QPVVKDVKKGMSRAQVAQIAGKPSSEVSMIHARGTCQTYILGQRDGKAETYFVALDDTGHVINS

Classification:

Multifun Terms (GenProtEC)
		3 - regulation --> 3.3 - genetic unit regulated --> 3.3.1 - operon
		5 - cell processes --> 5.5 - adaptations --> 5.5.1 - osmotic pressure
Gene Ontology Terms (GO)
	cellular_component	GO:0019867 - outer membrane GO:0016020 - membrane GO:0005886 - plasma membrane
	molecular_function	GO:0005515 - protein binding
	biological_process	GO:0006970 - response to osmotic stress

Note(s):

Note(s): ...[more].

External database links:

ECOCYC:

ECOLIWIKI:

INTERPRO:

INTERPRO:

PFAM:

PRIDE:

PRODB:

PROSITE:

REFSEQ:

SMR:

UNIPROT:

Operon

Name:

osmE

Operon arrangement:

Transcription unit	Promoter
osmE	osmEp
osmE	osmEp2

Transcriptional Regulation
	Display Regulation
Repressed by:	IHF, Fis

Elements in the selected gene context region unrelated to any object in RegulonDB

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	TSS_2047 (cluster)	1822275	reverse	For this promoter, there is a cluster of 2 transcription start sites,in the interval 1822274 to 1822275, where the highest frequency is at position 1820298. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[1]
promoter	TSS_2048 (cluster)	1822278	reverse	For this promoter, there is a cluster of 2 transcription start sites,in the interval 1822277 to 1822278, where the highest frequency is at position 1820301. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[1]
promoter	TSS_2050	1822428	forward	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2051	1822436	forward	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2052	1822732	forward	nd	[RS-EPT-CBR]	[1]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

Reference(s)
[1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

Reference(s)

[1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.