Gene
Name:	ppiB
Synonym(s):	ECK0518, EG10758, b0525
Genome position(nucleotides):	553943 <-- 554437 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	47.88
External database links:

ASAP:	ABE-0001806
CGSC:	31117
ECHOBASE:	EB0751
ECOLIHUB:	ppiB
OU-MICROARRAY:	b0525
STRING:	511145.b0525
COLOMBOS:	ppiB

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	TSS_674 (cluster)	554360	reverse	For this promoter, there is a cluster of 2 transcription start sites,in the interval 554359 to 554360, where the highest frequency is at position 553582. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[5]
promoter	TSS_675	554367	reverse	nd	[RS-EPT-CBR]	[5]
promoter	TSS_676	554460	reverse	nd	[RS-EPT-CBR]	[5]
promoter	TSS_677 (cluster)	554490	reverse	For this promoter, there is a cluster of 2 transcription start sites,in the interval 554489 to 554490, where the highest frequency is at position 553713. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[5]
promoter	TSS_678	554492	reverse	nd	[RS-EPT-CBR]	[5]

Reference(s)
[1] Guignard L., Ozawa K., Pursglove SE., Otting G., Dixon NE., 2002, NMR analysis of in vitro-synthesized proteins without purification: a high-throughput approach., FEBS Lett 524(1-3):159-62
[2] Rodriguez-Moya M., Gonzalez R., 2015, Proteomic analysis of the response of Escherichia coli to short-chain fatty acids., J Proteomics 122:86-99
[3] Skagia A., Zografou C., Venieraki A., Fasseas C., Katinakis P., Dimou M., 2017, Functional analysis of the cyclophilin PpiB role in bacterial cell division., Genes Cells 22(9):810-824
[4] Yang Y., Pan BB., Tan X., Yang F., Liu Y., Su XC., Goldfarb D., 2020, In-Cell Trityl-Trityl Distance Measurements on Proteins., J Phys Chem Lett 11(3):1141-1147
[5] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.