RegulonDB RegulonDB 11.1: Gene Form
   

rhsB gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

rhsB nikR yhhH yrhC rhsBp8 rhsBp8 TSS_4088 TSS_4088 rhsBp10 rhsBp10 rhsBp12 rhsBp12 rhsBp3 rhsBp3 rhsBp9 rhsBp9 rhsBp11 rhsBp11

Gene      
Name: rhsB    Texpresso search in the literature
Synonym(s): ECK3466, EG10847, b3482
Genome position(nucleotides): 3619192 --> 3623427
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 58.81
External database links:  
ASAP:
 ABE-0011371
ECHOBASE:
 EB0840
ECOLIHUB:
 rhsB
ECOO157CYC:
 Z0705
ECOO157CYC:
 Z5488
ECOO157CYC:
 Z5487
ECOO157CYC:
 Z0268
ECOO157CYC:
 Z0702
ECOO157CYC:
 Z2257
ECOO157CYC:
 Z2259
ECOO157CYC:
 Z2261
ECOO157CYC:
 Z5485
OU-MICROARRAY:
 b3482
STRING:
 511145.b3482
COLOMBOS: rhsB


Product      
Name: rhs element protein RhsB
Synonym(s): RhsB
Sequence: Get amino acid sequence Fasta Format
Cellular location: extracellular space,outer membrane
Molecular weight: 159.394
Isoelectric point: 6.722
Motif(s):
 
Type Positions Sequence Comment
46 -> 123 GHPVNPLLGAKVLPGETDIALPGPLPFILSRTYSSYRTKTPAPVGSLGPGWKMPADIRLQLRDNTLILSDNGGRSLYF
330 -> 352 GKQVRSFTYDDKYRGRMVAHRHT UniProt: 1.
353 -> 374 GRPEIRYRYDSDGRVTEQLNPA UniProt: 2.
361 -> 391 YDSDGRVTEQLNPAGLSYTYQYEKDRITITD
375 -> 417 GLSYTYQYEKDRITITDSLDRREVLHTQGEAGLKRVVKKEHAD UniProt: 3.

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0009279 - cell outer membrane
GO:0005576 - extracellular region
Note(s): Note(s): ...[more].
Reference(s): [1] Lin RJ., et al., 1984
External database links:  
ALPHAFOLD:
 P16917
DIP:
 DIP-10700N
ECOCYC:
 EG10847-MONOMER
ECOLIWIKI:
 b3482
ECOO157CYC:
 Z0702-MONOMER
ECOO157CYC:
 Z0268-MONOMER
ECOO157CYC:
 Z2257-MONOMER
ECOO157CYC:
 Z0705-MONOMER
ECOO157CYC:
 Z5488-MONOMER
ECOO157CYC:
 Z2259-MONOMER
ECOO157CYC:
 Z2261-MONOMER
ECOO157CYC:
 Z5485-MONOMER
ECOO157CYC:
 Z5487-MONOMER
INTERPRO:
 IPR001826
INTERPRO:
 IPR006530
INTERPRO:
 IPR022385
INTERPRO:
 IPR025479
INTERPRO:
 IPR031325
PFAM:
 PF20148
PFAM:
 PF14220
PFAM:
 PF05593
PFAM:
 PF03527
PRIDE:
 P16917
PRINTS:
 PR00394
PRODB:
 PRO_000023744
REFSEQ:
 YP_026224
SMR:
 P16917
UNIPROT:
 P16917


Operon      
Name: rhsB         
Operon arrangement:
Transcription unit        Promoter
rhsB


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter rhsBp11 3619003 forward nd [COMP-AINF] [2]
  promoter rhsBp9 3619044 forward nd [COMP-AINF] [2]
  promoter rhsBp3 3619074 forward nd [COMP-AINF] [2]
  promoter rhsBp12 3619097 forward nd [COMP-AINF] [2]
  promoter rhsBp10 3619113 forward nd [COMP-AINF] [2]
  promoter TSS_4088 3619164 reverse nd [RS-EPT-CBR] [3]
  promoter rhsBp8 3619178 forward nd [COMP-AINF] [2]
  promoter yhhIp6 3624173 forward nd [COMP-AINF] [2]


Evidence    

 [COMP-AINF] Inferred computationally without human oversight

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Lin RJ., Capage M., Hill CW., 1984, A repetitive DNA sequence, rhs, responsible for duplications within the Escherichia coli K-12 chromosome., J Mol Biol 177(1):1-18

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [3] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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