RegulonDB RegulonDB 11.1: Gene Form
   

rpsB gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

tsf rpsB tff terminator anti-terminator anti-anti-terminator anti-anti-terminator terminator TSS_325 TSS_325 TSS_324 TSS_324 TSS_323 TSS_323 TSS_322 TSS_322 TSS_321 TSS_321 TSS_320 TSS_320 TSS_319 (cluster) TSS_319 (cluster) TSS_318 TSS_318 TSS_317 TSS_317 rpsBp rpsBp

Gene      
Name: rpsB    Texpresso search in the literature
Synonym(s): ECK0168, EG10901, b0169
Genome position(nucleotides): 189874 --> 190599
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 51.38
External database links:  
ASAP:
 ABE-0000575
CGSC:
 229
ECHOBASE:
 EB0894
ECOLIHUB:
 rpsB
OU-MICROARRAY:
 b0169
STRING:
 511145.b0169
COLOMBOS: rpsB


Product      
Name: 30S ribosomal subunit protein S2
Synonym(s): RpsB
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol,ribosome
Molecular weight: 26.744
Isoelectric point: 7.161
Motif(s):
 
Type Positions Sequence Comment
2 -> 241 ATVSMRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKGKILFVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGRSQDLASQAEESFVEAE UniProt: 30S ribosomal protein S2.
9 -> 224 MLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKGKILFVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREG

 
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.3 - protein related --> 2.3.2 - translation
  2 - information transfer --> 2.3 - protein related --> 2.3.8 - ribosomal proteins
  6 - cell structure --> 6.6 - ribosomes
Gene Ontology Terms (GO)  
cellular_component GO:0005737 - cytoplasm
GO:0005840 - ribosome
GO:0015935 - small ribosomal subunit
GO:0022627 - cytosolic small ribosomal subunit
molecular_function GO:0003735 - structural constituent of ribosome
GO:0005515 - protein binding
GO:0008270 - zinc ion binding
biological_process GO:0006412 - translation
GO:0000028 - ribosomal small subunit assembly
GO:0002181 - cytoplasmic translation
Note(s): Note(s): ...[more].
Reference(s): [1] Beckert B., et al., 2018
External database links:  
ALPHAFOLD:
 P0A7V0
DIP:
 DIP-6877N
ECOCYC:
 EG10901-MONOMER
ECOLIWIKI:
 b0169
INTERPRO:
 IPR023591
INTERPRO:
 IPR005706
INTERPRO:
 IPR001865
INTERPRO:
 IPR018130
PANTHER:
 PTHR12534
PDB:
 1M5G
PDB:
 2YKR
PDB:
 3J9Y
PDB:
 3J9Z
PDB:
 3JA1
PDB:
 3JBU
PDB:
 3JBV
PDB:
 3JCD
PDB:
 3JCE
PDB:
 3JCJ
PDB:
 3JCN
PDB:
 4A2I
PDB:
 4ADV
PDB:
 4ODL
PDB:
 4ODM
PDB:
 4ODN
PDB:
 4ODP
PDB:
 4U1U
PDB:
 4U1V
PDB:
 4U20
PDB:
 4U24
PDB:
 4U25
PDB:
 4U26
PDB:
 4U27
PDB:
 4V48
PDB:
 4V4H
PDB:
 4V4Q
PDB:
 4V4V
PDB:
 4V4W
PDB:
 4V50
PDB:
 4V52
PDB:
 4V53
PDB:
 4V54
PDB:
 4V55
PDB:
 4V56
PDB:
 4V57
PDB:
 4V5B
PDB:
 4V5H
PDB:
 4V5Y
PDB:
 4V64
PDB:
 4V65
PDB:
 4V66
PDB:
 4V69
PDB:
 4V6C
PDB:
 4V6D
PDB:
 4V6E
PDB:
 4V6K
PDB:
 4V6L
PDB:
 4V6M
PDB:
 4V6N
PDB:
 4V6O
PDB:
 4V6P
PDB:
 4V6Q
PDB:
 4V6R
PDB:
 4V6S
PDB:
 4V6T
PDB:
 4V6V
PDB:
 4V6Y
PDB:
 4V6Z
PDB:
 4V70
PDB:
 4V71
PDB:
 4V72
PDB:
 4V73
PDB:
 4V74
PDB:
 4V75
PDB:
 4V76
PDB:
 4V77
PDB:
 4V78
PDB:
 4V79
PDB:
 4V7A
PDB:
 4V7B
PDB:
 4V7C
PDB:
 4V7D
PDB:
 4V7I
PDB:
 4V7S
PDB:
 4V7T
PDB:
 4V7U
PDB:
 4V7V
PDB:
 4V85
PDB:
 4V89
PDB:
 4V9C
PDB:
 4V9D
PDB:
 4V9O
PDB:
 4V9P
PDB:
 4WF1
PDB:
 4WOI
PDB:
 4WWW
PDB:
 4YBB
PDB:
 5AFI
PDB:
 5H5U
PDB:
 5IQR
PDB:
 5IT8
PDB:
 5J5B
PDB:
 5J7L
PDB:
 5J88
PDB:
 5J8A
PDB:
 5J91
PDB:
 5JC9
PDB:
 5JTE
PDB:
 5JU8
PDB:
 5KCR
PDB:
 5KCS
PDB:
 5KPS
PDB:
 5KPV
PDB:
 5KPW
PDB:
 5KPX
PDB:
 5L3P
PDB:
 5LZA
PDB:
 5LZB
PDB:
 5LZC
PDB:
 5LZD
PDB:
 5LZE
PDB:
 5LZF
PDB:
 5MDV
PDB:
 5MDW
PDB:
 5MDY
PDB:
 5MDZ
PDB:
 5ME0
PDB:
 5ME1
PDB:
 5MGP
PDB:
 5MY1
PDB:
 5NO3
PDB:
 5NP6
PDB:
 5NWY
PDB:
 5O2R
PDB:
 5U4I
PDB:
 5U9F
PDB:
 5U9G
PDB:
 5UYK
PDB:
 5UYL
PDB:
 5UYM
PDB:
 5UYN
PDB:
 5UYP
PDB:
 5UYQ
PDB:
 5UZ4
PDB:
 5WDT
PDB:
 5WE4
PDB:
 5WE6
PDB:
 5WFK
PDB:
 6BU8
PDB:
 6BY1
PDB:
 6C4I
PDB:
 6ENF
PDB:
 6ENJ
PDB:
 6ENU
PDB:
 6GWT
PDB:
 6GXM
PDB:
 6GXN
PDB:
 6GXO
PDB:
 6GXP
PDB:
 6H4N
PDB:
 6H58
PDB:
 6HRM
PDB:
 6I7V
PDB:
 6NQB
PDB:
 6O9J
PDB:
 6O9K
PDB:
 6OFX
PDB:
 6OG7
PDB:
 6ORE
PDB:
 6ORL
PDB:
 6OST
PDB:
 6OT3
PDB:
 6OUO
PDB:
 6Q97
PDB:
 6Q98
PDB:
 6Q9A
PDB:
 6SZS
PDB:
 6TBV
PDB:
 6TC3
PDB:
 6VWL
PDB:
 6VWM
PDB:
 6VWN
PDB:
 6W7M
PDB:
 6WD6
PDB:
 6WDB
PDB:
 6WDC
PDB:
 6WDD
PDB:
 6WDE
PDB:
 6WDF
PDB:
 6WDG
PDB:
 6WDH
PDB:
 6WDI
PDB:
 6WDJ
PDB:
 6WDK
PDB:
 6WDL
PDB:
 6WDM
PDB:
 6WNV
PDB:
 6WNW
PDB:
 6XE0
PDB:
 6XZA
PDB:
 6XZB
PDB:
 6Y69
PDB:
 6ZTL
PDB:
 7JSS
PDB:
 7JSW
PDB:
 7JSZ
PDB:
 7JT1
PDB:
 7JT2
PDB:
 7JT3
PFAM:
 PF00318
PRIDE:
 P0A7V0
PRINTS:
 PR00395
PRODB:
 PRO_000023855
PROSITE:
 PS00963
PROSITE:
 PS00962
REFSEQ:
 NP_414711
SMR:
 P0A7V0
UNIPROT:
 P0A7V0


Operon      
Name: tff-rpsB-tsf         
Operon arrangement:
Transcription unit        Promoter
rpsB-tsf


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_317 190209 forward nd [RS-EPT-CBR] [2]
  promoter TSS_318 190213 forward nd [RS-EPT-CBR] [2]
  promoter TSS_319 (cluster) 190227 forward nd [RS-EPT-CBR] [2]
  promoter TSS_320 190234 forward nd [RS-EPT-CBR] [2]
  promoter TSS_321 190257 forward nd [RS-EPT-CBR] [2]
  promoter TSS_322 190355 forward nd [RS-EPT-CBR] [2]
  promoter TSS_323 190448 forward nd [RS-EPT-CBR] [2]
  promoter TSS_324 190803 forward nd [RS-EPT-CBR] [2]
  promoter TSS_325 190841 forward nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Beckert B., Turk M., Czech A., Berninghausen O., Beckmann R., Ignatova Z., Plitzko JM., Wilson DN., 2018, Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1., Nat Microbiol 3(10):1115-1121

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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