RegulonDB RegulonDB 10.9: Gene Form
   

rpsG gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

fusA rpsG rpsL TSS_3936 (cluster) TSS_3936 (cluster) TSS_3935 TSS_3935 TSS_3934 TSS_3934 TSS_3933 TSS_3933 TSS_3932 TSS_3932 TSS_3931 TSS_3931 TSS_3930 TSS_3930 TSS_3929 TSS_3929 TSS_3928 TSS_3928 TSS_3927 TSS_3927 TSS_3926 TSS_3926 TSS_3925 TSS_3925 TSS_3924 TSS_3924 TSS_3923 TSS_3923 TSS_3922 (cluster) TSS_3922 (cluster) TSS_3921 TSS_3921 TSS_3920 TSS_3920 TSS_3919 TSS_3919 TSS_3918 TSS_3918 TSS_3917 TSS_3917 TSS_3916 TSS_3916 TSS_3915 (cluster) TSS_3915 (cluster) TSS_3914 TSS_3914 TSS_3913 TSS_3913 TSS_3912 TSS_3912 TSS_3911 TSS_3911 TSS_3910 TSS_3910 TSS_3909 TSS_3909 TSS_3908 TSS_3908 fusAp fusAp TSS_3907 TSS_3907 TSS_3906 TSS_3906 TSS_3905 TSS_3905 TSS_3904 TSS_3904 TSS_3903 TSS_3903 TSS_3902 TSS_3902 TSS_3901 TSS_3901 TSS_3900 TSS_3900 TSS_3899 TSS_3899 TSS_3898 (cluster) TSS_3898 (cluster) TSS_3897 TSS_3897 TSS_3896 TSS_3896 TSS_3895 TSS_3895 TSS_3894 (cluster) TSS_3894 (cluster) TSS_3893 TSS_3893 TSS_3892 (cluster) TSS_3892 (cluster) TSS_3891 TSS_3891 TSS_3890 TSS_3890 TSS_3889 (cluster) TSS_3889 (cluster) TSS_3888 TSS_3888 TSS_3887 TSS_3887 TSS_3886 (cluster) TSS_3886 (cluster) TSS_3885 TSS_3885 TSS_3884 TSS_3884 tufAp1 tufAp1 tufAp2 tufAp2 TSS_3882 TSS_3882 TSS_3881 TSS_3881 TSS_3880 TSS_3880 TSS_3879 TSS_3879 TSS_3878 TSS_3878 TSS_3877 TSS_3877 TSS_3876 TSS_3876 TSS_3875 (cluster) TSS_3875 (cluster) TSS_3874 TSS_3874 TSS_3873 (cluster) TSS_3873 (cluster) TSS_3872 TSS_3872 TSS_3871 TSS_3871 TSS_3870 TSS_3870 TSS_3869 (cluster) TSS_3869 (cluster) TSS_3868 TSS_3868 TSS_3867 (cluster) TSS_3867 (cluster) TSS_3866 TSS_3866 TSS_3865 TSS_3865

Gene      
Name: rpsG    Texpresso search in the literature
Synonym(s): ECK3328, EG10906, b3341
Genome position(nucleotides): 3473542 <-- 3474081 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
50.19
External database links:  
ASAP:
ABE-0010917
CGSC:
224
ECHOBASE:
EB0899
ECOLIHUB:
rpsG
OU-MICROARRAY:
b3341
STRING:
511145.b3341
COLOMBOS: rpsG


Product      
Name: 30S ribosomal subunit protein S7
Synonym(s): RpsG
Sequence: Get amino acid sequence Fasta Format
Cellular location: ribosome,cytosol
Molecular weight: 20.019
Isoelectric point: 11.023
Motif(s):
 
Type Positions Sequence
36 -> 36 K
1 -> 149 MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLANELSDAAENKGTAVKKREDVHRMAEANK
116 -> 116 M
92 -> 92 R
2 -> 18 PRRRVIGQRKILPDPKF

 

Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.3 - protein related --> 2.3.2 - translation
  2 - information transfer --> 2.3 - protein related --> 2.3.8 - ribosomal proteins
  6 - cell structure --> 6.6 - ribosomes
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
GO:0005840 - ribosome
GO:0015935 - small ribosomal subunit
GO:0022627 - cytosolic small ribosomal subunit
molecular_function GO:0003735 - structural constituent of ribosome
GO:0005515 - protein binding
GO:0003723 - RNA binding
GO:0003729 - mRNA binding
GO:0000049 - tRNA binding
GO:0019843 - rRNA binding
biological_process GO:0006412 - translation
GO:0017148 - negative regulation of translation
GO:0000028 - ribosomal small subunit assembly
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-10783N
ECOCYC:
EG10906-MONOMER
ECOLIWIKI:
b3341
INTERPRO:
IPR000235
INTERPRO:
IPR005717
INTERPRO:
IPR036823
INTERPRO:
IPR020606
INTERPRO:
IPR023798
MODBASE:
P02359
PANTHER:
PTHR11205
PDB:
1EG0
PDB:
1M5G
PDB:
1ML5
PDB:
2YKR
PDB:
3J5S
PDB:
3J9Y
PDB:
3J9Z
PDB:
3JA1
PDB:
3JBU
PDB:
3JBV
PDB:
3JCD
PDB:
3JCE
PDB:
3JCJ
PDB:
3JCN
PDB:
4A2I
PDB:
4ADV
PDB:
4U1U
PDB:
4U1V
PDB:
4U20
PDB:
4U24
PDB:
4U25
PDB:
4U26
PDB:
4U27
PDB:
4V47
PDB:
4V48
PDB:
4V4H
PDB:
4V4Q
PDB:
4V4V
PDB:
4V4W
PDB:
4V50
PDB:
4V52
PDB:
4V53
PDB:
4V54
PDB:
4V55
PDB:
4V56
PDB:
4V57
PDB:
4V5B
PDB:
4V5H
PDB:
4V5Y
PDB:
4V64
PDB:
4V65
PDB:
4V66
PDB:
4V69
PDB:
4V6C
PDB:
4V6D
PDB:
4V6E
PDB:
4V6K
PDB:
4V6L
PDB:
4V6M
PDB:
4V6N
PDB:
4V6O
PDB:
4V6P
PDB:
4V6Q
PDB:
4V6R
PDB:
4V6S
PDB:
4V6T
PDB:
4V6V
PDB:
4V6Y
PDB:
4V6Z
PDB:
4V70
PDB:
4V71
PDB:
4V72
PDB:
4V73
PDB:
4V74
PDB:
4V75
PDB:
4V76
PDB:
4V77
PDB:
4V78
PDB:
4V79
PDB:
4V7A
PDB:
4V7B
PDB:
4V7C
PDB:
4V7D
PDB:
4V7I
PDB:
4V7S
PDB:
4V7T
PDB:
4V7U
PDB:
4V7V
PDB:
4V85
PDB:
4V89
PDB:
4V9C
PDB:
4V9D
PDB:
4V9O
PDB:
4V9P
PDB:
4WF1
PDB:
4WOI
PDB:
4WWW
PDB:
4YBB
PDB:
5AFI
PDB:
5H5U
PDB:
5IQR
PDB:
5IT8
PDB:
5J5B
PDB:
5J7L
PDB:
5J88
PDB:
5J8A
PDB:
5J91
PDB:
5JC9
PDB:
5JTE
PDB:
5JU8
PDB:
5KCR
PDB:
5KCS
PDB:
5KPS
PDB:
5KPV
PDB:
5KPW
PDB:
5KPX
PDB:
5L3P
PDB:
5LZA
PDB:
5LZB
PDB:
5LZC
PDB:
5LZD
PDB:
5LZE
PDB:
5LZF
PDB:
5MDV
PDB:
5MDW
PDB:
5MDY
PDB:
5MDZ
PDB:
5ME0
PDB:
5ME1
PDB:
5MGP
PDB:
5MY1
PDB:
5NO2
PDB:
5NO3
PDB:
5NO4
PDB:
5NP6
PDB:
5NWY
PDB:
5O2R
PDB:
5U4I
PDB:
5U9F
PDB:
5U9G
PDB:
5UYK
PDB:
5UYL
PDB:
5UYM
PDB:
5UYN
PDB:
5UYP
PDB:
5UYQ
PDB:
5UZ4
PDB:
5WDT
PDB:
5WE4
PDB:
5WE6
PDB:
5WFK
PDB:
6BU8
PDB:
6BY1
PDB:
6C4I
PDB:
6ENF
PDB:
6ENJ
PDB:
6ENU
PDB:
6GWT
PDB:
6GXM
PDB:
6GXN
PDB:
6GXO
PDB:
6GXP
PDB:
6H4N
PDB:
6H58
PDB:
6HRM
PDB:
6I7V
PDB:
6O9J
PDB:
6O9K
PDB:
6OFX
PDB:
6OG7
PDB:
6ORE
PDB:
6ORL
PDB:
6OST
PDB:
6OT3
PDB:
6OUO
PDB:
6Q97
PDB:
6Q98
PDB:
6Q9A
PDB:
6SZS
PDB:
6TBV
PDB:
6TC3
PFAM:
PF00177
PRIDE:
P02359
PRODB:
PRO_000023860
PROSITE:
PS00052
REFSEQ:
NP_417800
SMR:
P02359
UNIPROT:
P02359


Operon      
Name: rpsLG-fusA-tufA         
Operon arrangement:
Transcription unit        Promoter
tufA
tufA
fusA-tufA
rpsLG-fusA-tufA


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_3865 3471411 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3866 3471415 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3867 (cluster) 3471421 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_3868 3471425 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3869 (cluster) 3471431 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_3870 3471437 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3871 3471446 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3872 3471455 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3873 (cluster) 3471470 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_3874 3471472 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3875 (cluster) 3471525 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_3876 3471528 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3877 3471536 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3878 3471544 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3879 3471546 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3880 3471555 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3881 3471569 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3882 3471577 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3884 3471772 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3885 3471838 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3886 (cluster) 3471847 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_3887 3471910 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3888 3472224 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3889 (cluster) 3472229 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_3890 3472232 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3891 3472234 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3892 (cluster) 3472248 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_3893 3472252 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3894 (cluster) 3472256 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_3895 3472359 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3896 3472387 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3897 3472395 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3898 (cluster) 3472530 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_3899 3472624 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3900 3472944 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3901 3473043 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3902 3473054 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3903 3473057 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3904 3473119 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3905 3473180 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3906 3473265 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3907 3473631 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3908 3473774 forward nd [RS-EPT-CBR] [1]
  promoter TSS_3909 3473810 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3910 3473812 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3911 3473899 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3912 3473903 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3913 3473914 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3914 3473953 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3915 (cluster) 3473958 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_3916 3473962 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3917 3473997 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3918 3473999 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3919 3474004 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3920 3474070 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3921 3474079 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3922 (cluster) 3474082 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_3923 3474101 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3924 3474116 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3925 3474135 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3926 3474139 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3927 3474141 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3928 3474149 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3929 3474182 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3930 3474189 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3931 3474191 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3932 3474204 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3933 3474209 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3934 3474211 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3935 3474528 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3936 (cluster) 3474542 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


RegulonDB