RegulonDB RegulonDB 10.9: Gene Form
   

gutQ gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

Gene      
Name: gutQ    Texpresso search in the literature
Synonym(s): ECK2703, EG10973, b2708, srlQ
Genome position(nucleotides): 2829813 --> 2830778 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 57.35
External database links:  
ASAP:
 ABE-0008902
CGSC:
 33206
ECHOBASE:
 EB0966
ECOLIHUB:
 gutQ
OU-MICROARRAY:
 b2708
STRING:
 511145.b2708
COLOMBOS: gutQ


Product      
Name: D-arabinose 5-phosphate isomerase GutQ
Synonym(s): GutQ, SrlQ
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 34.031
Isoelectric point: 6.313
Motif(s):
 
Type Positions Sequence
269 -> 321 MTVGGTTLQSQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQAGII
39 -> 170 LHCEGKVVVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGAKELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDISVEREACPMHLAPTSSTVNTLMMGDALAMA
141 -> 143 SVE
34 -> 177 AANIILHCEGKVVVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGAKELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDISVEREACPMHLAPTSSTVNTLMMGDALAMAVMQARGF
49 -> 54 GIGKSG

 
Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism --> 1.6 - biosynthesis of macromolecules (cellular constituents) --> 1.6.3 - lipopolysaccharide --> 1.6.3.2 - core region
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0016853 - isomerase activity
GO:0046872 - metal ion binding
GO:0019146 - arabinose-5-phosphate isomerase activity
GO:0000166 - nucleotide binding
GO:0005524 - ATP binding
GO:0042802 - identical protein binding
GO:0097367 - carbohydrate derivative binding
biological_process GO:0005975 - carbohydrate metabolic process
GO:0009103 - lipopolysaccharide biosynthetic process
GO:0019294 - keto-3-deoxy-D-manno-octulosonic acid biosynthetic process
GO:0044010 - single-species biofilm formation
GO:0051289 - protein homotetramerization
GO:1901135 - carbohydrate derivative metabolic process
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
 EG10973-MONOMER
ECOLIWIKI:
 b2708
INTERPRO:
 IPR035474
INTERPRO:
 IPR004800
INTERPRO:
 IPR001347
INTERPRO:
 IPR000644
MODBASE:
 P17115
PFAM:
 PF01380
PFAM:
 PF00571
PRIDE:
 P17115
PROSITE:
 PS51464
PROSITE:
 PS51371
REFSEQ:
 NP_417188
SMR:
 P17115
UNIPROT:
 P17115


Operon      
Name: srlAEBD-gutM-srlR-gutQ         
Operon arrangement:
Transcription unit        Promoter
srlAEBD-gutM-srlR-gutQ
srlR


Transcriptional Regulation      
Display Regulation             
Activated by: CRP, H-NS, GutM
Repressed by: SrlR


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_3017 (cluster) 2828961 forward For this promoter, there
Read more > 		[RS-EPT-CBR] [1]
  promoter TSS_3018 (cluster) 2829709 forward For this promoter, there
Read more > 		[RS-EPT-CBR] [1]
  promoter TSS_3019 2829746 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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