Gene
Name:	suhB
Synonym(s):	ECK2530, EG10983, b2533, ssyA
Genome position(nucleotides):	2663442 --> 2664245 Genome Browser
Strand:	forward
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	54.48

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	TSS_2832	2663305	reverse	nd	[RS-EPT-CBR]	[3]
promoter	TSS_2833 (cluster)	2663405	forward	For this promoter, there is a cluster of 2 transcription start sites,in the interval 2663405 to 2663406, where the highest frequency is at position 2661428. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[3]
promoter	TSS_2834	2663415	forward	nd	[RS-EPT-CBR]	[3]
promoter	yfhRp4	2664204	forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 5.005. P-value: 8.461e-6 Read more >	[ICWHO]	[4]
promoter	yfhRp2	2664244	forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 3.69. P-value: 4.108e-5 Read more >	[ICWHO]	[4]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates
[ICWHO] Inferred computationally without human oversight

Reference(s)
[1] Court DL., Patterson TA., Baker T., Costantino N., Mao X., Friedman DI., 1995, Structural and functional analyses of the transcription-translation proteins NusB and NusE., J Bacteriol 177(9):2589-91
[2] Peters JM., Mooney RA., Kuan PF., Rowland JL., Keles S., Landick R., 2009, Rho directs widespread termination of intragenic and stable RNA transcription., Proc Natl Acad Sci U S A 106(36):15406-11
[3] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.
[4] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

RNA cis-regulatory element

Attenuation:	Transcriptional