RegulonDB RegulonDB 10.9: Gene Form
   

yfaA gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yfaS gyrA yfaA yfaT anti-anti-terminator anti-terminator terminator TSS_2505 TSS_2505 TSS_2504 TSS_2504 TSS_2503 TSS_2503 TSS_2502 TSS_2502

Gene      
Name: yfaA    Texpresso search in the literature
Synonym(s): ECK2222, EG11142, b2230, pufY
Genome position(nucleotides): 2334956 <-- 2336644 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
51.15
External database links:  
ASAP:
ABE-0007368
ECHOBASE:
EB1132
ECOLIHUB:
yfaA
OU-MICROARRAY:
b2230
STRING:
511145.b2230
COLOMBOS: yfaA


Product      
Name: DUF2138 domain-containing protein YfaA
Synonym(s): PufY, YfaA
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 62.671
Isoelectric point: 5.207
Motif(s):
 
Type Positions Sequence
16 -> 559 VGFGAIALLSAGVWALQYAGSGPEKTLSPLVVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLSKTEISSIKINSETVPVYQLRYNGNNALMFATYQDKMLVFSSTDMLFKDDQQDTEATAIAGDLLSGKKRWQASFGLEERTAEKTPVRQRIVVSARWLGFGYQRLMPSFAGVRFEMGNDGWHSFVALNDESASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGAAGLCWYEDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQTLNKTRPAMVDVIPTDGIVPLYINPQGIAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGAAWQWLPITW

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
EG11142-MONOMER
ECOLIWIKI:
b2230
INTERPRO:
IPR018671
PFAM:
PF09909
PRIDE:
P17994
REFSEQ:
NP_416733
UNIPROT:
P17994


Operon      
Name: yfaATSQP         
Operon arrangement:
Transcription unit        Promoter
yfaATSQP


RNA cis-regulatory element    
Attenuation: Transcriptional


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yfaPp4 2328199 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter TSS_2502 2338373 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2503 2338375 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2504 2338445 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2505 2338825 reverse nd [RS-EPT-CBR] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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