RegulonDB RegulonDB 10.9: Gene Form
   

ygiA gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

tolC ygiC ygiB nudF ygiA SoxS Rob MarA PhoP TSS_3340 TSS_3340 TSS_3339 TSS_3339 TSS_3338 TSS_3338 TSS_3337 TSS_3337 TSS_3336 TSS_3336 tolCp4 tolCp4 tolCp3 tolCp3 tolCp2 tolCp2 tolCp1 tolCp1 TSS_3334 TSS_3334 TSS_3333 TSS_3333

Gene      
Name: ygiA    Texpresso search in the literature
Synonym(s): ECK3027, EG11163, b3036
Type: Phantom Gene
Genome position(nucleotides): 3179596 --> 3179856 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
52.87
Note(s): ygiA was deaccessioned in ASAP in 2007. Former UniProt ID: Q79CP2.
External database links:  
ASAP:
ABE-0009967
ECHOBASE:
EB4365
ECOLIHUB:
ygiA
ECOLIWIKI:
b3036
OU-MICROARRAY:
b3036
STRING:
316407.85675839
COLOMBOS: ygiA


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_3333 3177710 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3334 3178001 forward nd [RS-EPT-CBR] [1]
  promoter TSS_3336 3178133 forward nd [RS-EPT-CBR] [1]
  promoter TSS_3337 3178889 forward nd [RS-EPT-CBR] [1]
  promoter TSS_3338 3179055 forward nd [RS-EPT-CBR] [1]
  promoter TSS_3339 3179717 forward nd [RS-EPT-CBR] [1]
  promoter TSS_3340 3180436 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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