RegulonDB RegulonDB 10.10: Gene Form
   

yhaB gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yhaC yhaB tdcR terminator anti-terminator anti-anti-terminator TSS_3407 TSS_3407 yhaBp3 yhaBp3

Gene      
Name: yhaB    Texpresso search in the literature
Synonym(s): ECK3109, EG11173, b3120
Genome position(nucleotides): 3267854 --> 3268393 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
35.56
External database links:  
ASAP:
ABE-0010261
ECHOBASE:
EB1160
ECOLIHUB:
yhaB
OU-MICROARRAY:
b3120
STRING:
511145.b3120
COLOMBOS: yhaB


Product      
Name: protein YhaB
Synonym(s): YhaB
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 20.577
Isoelectric point: 6.942
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
EG11173-MONOMER
ECOLIWIKI:
b3120
INTERPRO:
IPR016420
PRIDE:
P11865
REFSEQ:
NP_417590
UNIPROT:
P11865


Operon      
Name: yhaBC         
Operon arrangement:
Transcription unit        Promoter
yhaBC


RNA cis-regulatory element    
Attenuation: Transcriptional


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yhaBp3 3267816 forward nd [ICWHO] [1]
  promoter TSS_3407 3268142 reverse nd [RS-EPT-CBR] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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