RegulonDB RegulonDB 10.9: Gene Form
   

yhaC gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yhaC yhaB rnpB Fis rnpBp rnpBp TSS_3407 TSS_3407

Gene      
Name: yhaC    Texpresso search in the literature
Synonym(s): ECK3110, EG11174, b3121
Genome position(nucleotides): 3268415 --> 3269602 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
31.82
External database links:  
ASAP:
ABE-0010263
ECHOBASE:
EB1161
ECOLIHUB:
yhaC
OU-MICROARRAY:
b3121
STRING:
511145.b3121
COLOMBOS: yhaC


Product      
Name: uncharacterized protein YhaC
Synonym(s): YhaC
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 45.251
Isoelectric point: 4.139
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
biological_process GO:0006974 - cellular response to DNA damage stimulus
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
EG11174-MONOMER
ECOLIWIKI:
b3121
PRIDE:
P11864
REFSEQ:
NP_417591
SMR:
P11864
UNIPROT:
P11864


Operon      
Name: yhaBC         
Operon arrangement:
Transcription unit        Promoter
yhaBC


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_3407 3268142 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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