RegulonDB RegulonDB 10.9: Gene Form
   

tatE gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

lipA ybeM crcB tatE tatEp3 tatEp3 crcBp4 crcBp4 crcBp3 crcBp3 TSS_753 TSS_753 TSS_752 TSS_752

Gene      
Name: tatE    Texpresso search in the literature
Synonym(s): ECK0620, EG11305, b0627, ybeC
Genome position(nucleotides): 658947 --> 659150 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
50.0
External database links:  
ASAP:
ABE-0002153
ECHOBASE:
EB1282
ECOLIHUB:
tatE
OU-MICROARRAY:
b0627
STRING:
511145.b0627
COLOMBOS: tatE


Product      
Name: twin arginine protein translocation system - TatE protein
Synonym(s): TatE, YbeC
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 7.024
Isoelectric point: 9.867
Motif(s):
 
Type Positions Sequence
4 -> 51 ISITKLLVVAALVVLLFGTKKLRTLGGDLGAAIKGFKKAMNDDDAAAK
44 -> 44 N

 

Classification:
Multifun Terms (GenProtEC)  
  4 - transport --> 4.2 - Electrochemical potential driven transporters
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0005887 - integral component of plasma membrane
GO:0016021 - integral component of membrane
GO:0033281 - TAT protein transport complex
molecular_function GO:0008320 - protein transmembrane transporter activity
biological_process GO:0015031 - protein transport
GO:0065002 - intracellular protein transmembrane transport
GO:0043953 - protein transport by the Tat complex
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
EG11305-MONOMER
ECOLIWIKI:
b0627
INTERPRO:
IPR003369
INTERPRO:
IPR006312
INTERPRO:
IPR024905
PFAM:
PF02416
PRIDE:
P0A843
PRODB:
PRO_000024032
REFSEQ:
NP_415160
SMR:
P0A843
UNIPROT:
P0A843


Operon      
Name: tatE         
Operon arrangement:
Transcription unit        Promoter
tatE


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_752 657964 forward nd [RS-EPT-CBR] [1]
  promoter TSS_753 657966 forward nd [RS-EPT-CBR] [1]
  promoter crcBp3 657998 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter crcBp4 658008 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter tatEp3 658871 forward Similarity to the consensus
Read more >
[ICWHO] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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