RegulonDB RegulonDB 10.9: Gene Form
   

elbB gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

mtgA elbB yrbL arcZ arcB ArcA SoxR arcZp arcZp TSS_3529 TSS_3529 mtgAp4 mtgAp4

Gene      
Name: elbB    Texpresso search in the literature
Synonym(s): ECK3198, EG11383, b3209, elb2, s27a, yhbL, yzzB
Genome position(nucleotides): 3349806 <-- 3350459 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
52.75
External database links:  
ASAP:
ABE-0010532
ECHOBASE:
EB1356
ECOLIHUB:
elbB
OU-MICROARRAY:
b3209
STRING:
511145.b3209
COLOMBOS: elbB


Product      
Name: low activity glyoxalase ElbB
Synonym(s): ElbB, YhbL, YzzB, isoprenoid biosynthesis protein with amidotransferase-like domain, sigma cross-reacting protein 27A (SCRP-27A)
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 22.982
Isoelectric point: 4.393
Motif(s):
 
Type Positions Sequence
111 -> 111 C
195 -> 217 AQNIAEAASGIDKLVSRVLVLAE

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0016829 - lyase activity
biological_process GO:0008299 - isoprenoid biosynthetic process
GO:0045828 - positive regulation of isoprenoid metabolic process
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-48002N
ECOCYC:
EG11383-MONOMER
ECOLIWIKI:
b3209
INTERPRO:
IPR029062
INTERPRO:
IPR026041
MODBASE:
P0ABU5
PANTHER:
PTHR10224:SF12
PDB:
1OY1
PDB:
1VHQ
PRIDE:
P0ABU5
PRODB:
PRO_000022508
REFSEQ:
NP_417676
SMR:
P0ABU5
UNIPROT:
P0ABU5


Operon      
Name: elbB-mtgA         
Operon arrangement:
Transcription unit        Promoter
elbB-mtgA


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter mtgAp4 3349831 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter TSS_3529 3350497 reverse nd [RS-EPT-CBR] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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