RegulonDB RegulonDB 11.1: Gene Form
   

yjiV gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yjiV yjiT mcrC TSS_5148 TSS_5148

Gene      
Name: yjiV    Texpresso search in the literature
Synonym(s): ECK4334, EG11386, b4343, b4344, b4486, mcrD, yjiU
Type: Pseudo Gene
Genome position(nucleotides): 4574135 --> 4576855
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 50.13
External database links:  
CGSC:
 34616
ECHOBASE:
 EB2469
ECOLIHUB:
 yjiV
ECOO157CYC:
 Z5898
OU-MICROARRAY:
 b4344
COLOMBOS: yjiV


Product      
Name: putative uncharacterized protein YjiV
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 6.097
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P39393
ECOCYC:
 EG11386-MONOMER
ECOLIWIKI:
 b4486
ECOO157CYC:
 Z5898-MONOMER
INTERPRO:
 IPR027417
PRIDE:
 P39393
REFSEQ:
 YP_026289
SMR:
 P39393
UNIPROT:
 P39393


Operon      
Name: yjiV         
Operon arrangement:
Transcription unit        Promoter
yjiV


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_5148 4574607 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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