RegulonDB

Gene
Name:	yijD
Synonym(s):	ECK3956, EG11395, b3964
Genome position(nucleotides):	4161771 --> 4162130 Genome Browser
Strand:	forward
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	49.17
External database links:

ASAP:	ABE-0012981
ECHOBASE:	EB1368
ECOLIHUB:	yijD
OU-MICROARRAY:	b3964
STRING:	511145.b3964
COLOMBOS:	yijD

Product

Name:

DUF1422 domain-containing inner membrane protein YijD

Synonym(s):

YijD

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

inner membrane

Molecular weight:

13.023

Isoelectric point:

9.633

Motif(s):

Type	Positions	Sequence
	3 -> 115	QANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMPVGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQ
	94 -> 94	F
	9 -> 28	GTLLLALVAGLSINGTFAAL
	32 -> 50	IVPFSVFPIISLVLTVYCL
	62 -> 84	GLPGLAAACFILGVLLYSTVVRA

Classification:

Multifun Terms (GenProtEC)
Gene Ontology Terms (GO)
Gene Ontology Terms (GO)	cellular_component	GO:0016020 - membrane GO:0005886 - plasma membrane GO:0016021 - integral component of membrane

Note(s):

Note(s): ...[more].

Reference(s):

[1] Savage DF., et al., 2007

External database links:

ECOCYC:

ECOLIWIKI:

INTERPRO:

PFAM:

PRIDE:

REFSEQ:

UNIPROT:

Operon

Name:

fabR-yijD

Operon arrangement:

Transcription unit	Promoter
fabR-yijD

Elements in the selected gene context region unrelated to any object in RegulonDB

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	TSS_4688	4161094	forward	nd	[RS-EPT-CBR]	[2]
promoter	TSS_4689	4161458	forward	nd	[RS-EPT-CBR]	[2]
promoter	TSS_4690	4161554	forward	nd	[RS-EPT-CBR]	[2]
promoter	TSS_4691	4161556	forward	nd	[RS-EPT-CBR]	[2]
promoter	TSS_4692	4161745	forward	nd	[RS-EPT-CBR]	[2]
promoter	TSS_4693	4162891	reverse	nd	[RS-EPT-CBR]	[2]
promoter	TSS_4694	4162924	reverse	nd	[RS-EPT-CBR]	[2]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

Reference(s)
[1] Savage DF., Anderson CL., Robles-Colmenares Y., Newby ZE., Stroud RM., 2007, Cell-free complements in vivo expression of the E. coli membrane proteome., Protein Sci 16(5):966-76
[2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

Reference(s)

[1] Savage DF., Anderson CL., Robles-Colmenares Y., Newby ZE., Stroud RM., 2007, Cell-free complements in vivo expression of the E. coli membrane proteome., Protein Sci 16(5):966-76

[2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.