RegulonDB

Gene
Name:	rarD
Synonym(s):	ECK3813, EG11466, b3819, yigH
Genome position(nucleotides):	4003288 <-- 4004178 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	50.62
External database links:

ASAP:	ABE-0012472
ECHOBASE:	EB1434
ECOLIHUB:	rarD
OU-MICROARRAY:	b3819
STRING:	511145.b3819
COLOMBOS:	rarD

Product

Name:

putative transporter RarD

Synonym(s):

RarD, YigH

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

inner membrane

Molecular weight:

33.283

Isoelectric point:

9.882

Motif(s):

Type	Positions	Sequence
	18 -> 145	FIWGIAPAYFKLIYYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW
	73 -> 95	IFMLAVSAVLIGGNWLLFIWAVN
	100 -> 122	LEASLGYFINPLVNIVLGMIFLG
	102 -> 102	A
	129 -> 146	QWLAVILAICGVLVQLWT

Classification:

Multifun Terms (GenProtEC)
Multifun Terms (GenProtEC)		4 - transport --> 4.9.B - Putative uncharacterized transport protein
Gene Ontology Terms (GO)
Gene Ontology Terms (GO)	cellular_component	GO:0016020 - membrane GO:0005886 - plasma membrane GO:0005887 - integral component of plasma membrane GO:0016021 - integral component of membrane

Note(s):

Note(s): ...[more].

External database links:

ECOCYC:

ECOLIWIKI:

INTERPRO:

INTERPRO:

PANTHER:

PFAM:

PRIDE:

PRODB:

REFSEQ:

UNIPROT:

Operon

Name:

rarD

Operon arrangement:

Transcription unit	Promoter
rarD

RNA cis-regulatory element

Attenuation:	Translational

Elements in the selected gene context region unrelated to any object in RegulonDB

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	yigFp5	4002842	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 4.474. P-value: 1.381e-5 Read more >	[ICWHO]	[1]
promoter	yigFp4	4002875	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: poor homology. Score: 3.11. P-value: 9.805e-5 Read more >	[ICWHO]	[1]
promoter	rarDp1	4004227	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 3.443. P-value: 6.705e-5 Read more >	[ICWHO]	[1]
promoter	rarDp2	4004231	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 4.573. P-value: 1.960e-5 Read more >	[ICWHO]	[1]
promoter	rarDp4	4004241	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 6.055. P-value: 2.347e-5 Read more >	[ICWHO]	[1]
promoter	rarDp3	4004258	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 5.014. P-value: 2.873e-6 Read more >	[ICWHO]	[1]
promoter	rarDp5	4004297	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 6.083. P-value: 5.601e-5 Read more >	[ICWHO]	[1]

Evidence
[ICWHO] Inferred computationally without human oversight

Reference(s)
[1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78