RegulonDB RegulonDB 10.9: Gene Form
   

rmuC gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

rmuC udp ubiE terminator anti-terminator anti-anti-terminator ubiEp2 ubiEp2 ubiEp4 ubiEp4

Gene      
Name: rmuC    Texpresso search in the literature
Synonym(s): ECK3826, EG11472, b3832, yigN
Genome position(nucleotides): 4017333 --> 4018760 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
53.08
External database links:  
ASAP:
ABE-0012531
ECHOBASE:
EB1440
ECOLIHUB:
rmuC
OU-MICROARRAY:
b3832
STRING:
511145.b3832
COLOMBOS: rmuC


Product      
Name: putative recombination limiting protein RmuC
Synonym(s): RmuC, YigN
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 54.764
Isoelectric point: 5.054
Motif(s):
 
Type Positions Sequence
3 -> 25 FSIMVYAVIALVGVAIGWLFASY
136 -> 432 QSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLTHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLTRVLEASGLREGYEYETQVSIENDARSRMQPDVIVRLPQGKDVVIDAKMTLVAYERYFNAEDDYTRESALQEHIASVRNHIRLLGRKDYQQLPGLRTLDYVLMFIPVEPAFLLALDRQPELITEALKNNIMLVSPTTLLVALRTIANLWRYEHQSRNAQQIADRASKLYDKMRLFIDDMSAIGQSLDKAQDNYRQAMKKLSSGRGNVLAQAEAFRGLGVEIK

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005887 - integral component of plasma membrane
biological_process GO:0006310 - DNA recombination
Note(s): Note(s): ...[more].
Evidence: [IGI] Inferred from genetic interaction
Reference(s): [1] Slupska MM., et al., 2000
External database links:  
ECOCYC:
EG11472-MONOMER
ECOLIWIKI:
b3832
INTERPRO:
IPR003798
PANTHER:
PTHR30563
PFAM:
PF02646
PRIDE:
P0AG71
PRODB:
PRO_000023785
REFSEQ:
NP_418276
SMR:
P0AG71
UNIPROT:
P0AG71


Operon      
Name: rmuC         
Operon arrangement:
Transcription unit        Promoter
rmuC


RNA cis-regulatory element    
Attenuation: Transcriptional


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter ubiEp4 4018747 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter ubiEp2 4018751 forward Similarity to the consensus
Read more >
[ICWHO] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Slupska MM., Chiang JH., Luther WM., Stewart JL., Amii L., Conrad A., Miller JH., 2000, Genes involved in the determination of the rate of inversions at short inverted repeats., Genes Cells 5(6):425-37

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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