RegulonDB RegulonDB 11.1: Gene Form
   

yhhH gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

rhsB yhhI nikR yhhH yrhC terminator yhhIp6 yhhIp6 rhsBp8 rhsBp8 TSS_4088 TSS_4088 rhsBp10 rhsBp10 rhsBp12 rhsBp12 rhsBp3 rhsBp3 rhsBp9 rhsBp9 rhsBp11 rhsBp11

Gene      
Name: yhhH    Texpresso search in the literature
Synonym(s): ECK3467, EG11520, b3483
Genome position(nucleotides): 3623399 --> 3623782
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 33.33
External database links:  
ASAP:
 ABE-0011373
ECHOBASE:
 EB1482
ECOLIHUB:
 yhhH
OU-MICROARRAY:
 b3483
STRING:
 511145.b3483
COLOMBOS: yhhH


Product      
Name: PF15631 family protein YhhH
Synonym(s): YhhH
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 14.531
Isoelectric point: 8.039
Motif(s):
 
Type Positions Sequence Comment
5 -> 30 FMVICKKILFRNCVIVSLFVFTYNTW
60 -> 127 IALELAEIYVKNRYGQDAAEEEKPYEITELTTSWVVEGTIHSDQIAGGVFIIEIGKNDGRILNFGHGK

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005887 - integral component of plasma membrane
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P28911
ECOCYC:
 EG11520-MONOMER
ECOLIWIKI:
 b3483
INTERPRO:
 IPR028921
PFAM:
 PF15631
PRIDE:
 P28911
REFSEQ:
 NP_417940
SMR:
 P28911
UNIPROT:
 P28911


Operon      
Name: yhhH         
Operon arrangement:
Transcription unit        Promoter
yhhH


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter rhsBp11 3619003 forward nd [COMP-AINF] [1]
  promoter rhsBp9 3619044 forward nd [COMP-AINF] [1]
  promoter rhsBp3 3619074 forward nd [COMP-AINF] [1]
  promoter rhsBp12 3619097 forward nd [COMP-AINF] [1]
  promoter rhsBp10 3619113 forward nd [COMP-AINF] [1]
  promoter TSS_4088 3619164 reverse nd [RS-EPT-CBR] [2]
  promoter rhsBp8 3619178 forward nd [COMP-AINF] [1]
  promoter yhhIp6 3624173 forward nd [COMP-AINF] [1]


Evidence    

 [COMP-AINF] Inferred computationally without human oversight

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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