RegulonDB RegulonDB 11.1: Gene Form
   

yidI gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yidJ yidI yidH yidG yidK TSS_4256 TSS_4256 TSS_4255 TSS_4255

Gene      
Name: yidI    Texpresso search in the literature
Synonym(s): ECK3668, EG11697, b3677
Genome position(nucleotides): 3856415 --> 3856864
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 48.0
External database links:  
ASAP:
 ABE-0012022
ECHOBASE:
 EB1648
ECOLIHUB:
 yidI
OU-MICROARRAY:
 b3677
STRING:
 511145.b3677
COLOMBOS: yidI


Product      
Name: putative inner membrane protein YidI
Synonym(s): YidI
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 15.729
Isoelectric point: 9.414
Motif(s):
 
Type Positions Sequence Comment
9 -> 31 ISSLGMLFGAIALMMGIIHFSFG UniProt: Helical.
78 -> 97 ILNQSGIALAIAALLCAFIG UniProt: Helical.
118 -> 140 LAFHTLLFGIGIVCSILLIFLIF UniProt: Helical.

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P31446
ECOCYC:
 EG11697-MONOMER
ECOLIWIKI:
 b3677
INTERPRO:
 IPR016512
PRIDE:
 P31446
REFSEQ:
 NP_418133
UNIPROT:
 P31446


Operon      
Name: yidI         
Operon arrangement:
Transcription unit        Promoter
yidI


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_4255 3856395 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4256 3856414 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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