RegulonDB RegulonDB 11.0: Gene Form
   

yidK gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yidK yidJ yidL yidI glvG RcsB-BglJ terminator yidLp yidLp

Gene      
Name: yidK    Texpresso search in the literature
Synonym(s): ECK3670, EG11706, b3679
Genome position(nucleotides): 3858401 <-- 3860116
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
53.5
External database links:  
ASAP:
ABE-0012026
ECHOBASE:
EB1657
ECOLIHUB:
yidK
OU-MICROARRAY:
b3679
STRING:
511145.b3679
COLOMBOS: yidK


Product      
Name: putative transporter YidK
Synonym(s): YidK
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 62.085
Isoelectric point: 9.648
Motif(s):
 
Type Positions Sequence Comment
4 -> 24 LQILSFVGFTLLVAVITWWKV UniProt: Helical.
35 -> 442 YFLAGRSLKAPVIAASLMLTNLSTEQLVGLSGQAYKSGMSVMGWEVTSAVTLIFLALIFLPRYLKRGIATIPDFLEERYDKTTRIIIDFCFLIATGVCFLPIVLYSGALALNSLFHVGESLQISHGAAIWLLVILLGLAGILYAVIGGLRAMAVADSINGIGLVIGGLMVPVFGLIAMGKGSFMQGIEQLTTVHAEKLNSIGGPTDPLPIGAAFTGLILVNTFYWCTNQGIVQRTLASKSLAEGQKGALLTAVLKMLDPLVLVLPGLIAFHLYQDLPKADMAYPTLVNNVLPVPMVGFFGAVLFGAVISTFNGFLNSASTLFSMGIYRRIINQNAEPQQLVTVGRKFGFFIAIVSVLVAPWIANAPQGLYSWMKQLNGIYNVPLVTIIIMGFFFPRIPALAAKVAMGI
75 -> 95 VMGWEVTSAVTLIFLALIFLP UniProt: Helical.
119 -> 139 IIIDFCFLIATGVCFLPIVLY UniProt: Helical.
163 -> 183 IWLLVILLGLAGILYAVIGGL UniProt: Helical.

 

Classification:
Multifun Terms (GenProtEC)  
  4 - transport --> 4.2 - Electrochemical potential driven transporters --> 4.2.A - Porters (Uni-, Sym- and Antiporters)
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0005412 - glucose:sodium symporter activity
GO:0015293 - symporter activity
GO:0022857 - transmembrane transporter activity
biological_process GO:0006012 - galactose metabolic process
GO:0006811 - ion transport
GO:0006814 - sodium ion transport
GO:0055085 - transmembrane transport
GO:1904659 - glucose transmembrane transport
Note(s): Note(s): ...[more].
Reference(s): [1] Fuhrer T., et al., 2017
[2] Jindal S., et al., 2019
External database links:  
ALPHAFOLD:
P31448
DIP:
DIP-12450N
ECOCYC:
YIDK-MONOMER
ECOLIWIKI:
b3679
INTERPRO:
IPR001734
INTERPRO:
IPR038377
INTERPRO:
IPR018212
PFAM:
PF00474
PRIDE:
P31448
PROSITE:
PS00456
PROSITE:
PS50283
REFSEQ:
NP_418135
UNIPROT:
P31448


Operon      
Name: yidKJ         
Operon arrangement:
Transcription unit        Promoter
yidKJ


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Fuhrer T., Zampieri M., Sevin DC., Sauer U., Zamboni N., 2017, Genomewide landscape of gene-metabolome associations in Escherichia coli., Mol Syst Biol 13(1):907

 [2] Jindal S., Yang L., Day PJ., Kell DB., 2019, Involvement of multiple influx and efflux transporters in the accumulation of cationic fluorescent dyes by Escherichia coli., BMC Microbiol 19(1):195


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