RegulonDB

Gene
Name:	yidR
Synonym(s):	ECK3681, EG11713, b3689
Genome position(nucleotides):	3868062 <-- 3869309
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	55.21
External database links:

ASAP:	ABE-0012065
ECHOBASE:	EB1664
ECOLIHUB:	yidR
OU-MICROARRAY:	b3689
STRING:	511145.b3689
COLOMBOS:	yidR

Product

Name:

DUF3748 domain-containing galacturonate catabolism protein YidR

Synonym(s):

YidR

Sequence:

Get amino acid sequence Fasta Format

Molecular weight:

46.187

Isoelectric point:

6.249

Motif(s):

Type	Positions	Sequence	Comment
	74 -> 190	HVGVVTVHPKSEKYVFIHGPENPDETWHYDFHHRRGVIVEGGKMSNLDAMDITAPYTPGVLRGGSHVHVFSPNGERVSFTYNDHVMHELDPALDLRNVGVAAPFGPVNVQKQHPREY
	386 -> 402	PSADAVVFSPDGQWLAW

Classification:

Multifun Terms (GenProtEC)
Gene Ontology Terms (GO)
Gene Ontology Terms (GO)	biological_process	GO:0046397 - galacturonate catabolic process

Note(s):

Note(s): ...[more].

Evidence:

[EXP-IMP] Inferred from mutant phenotype

Reference(s):

[1] Fuhrer T., et al., 2017

External database links:

ALPHAFOLD:

DIP:

ECOCYC:

ECOLIWIKI:

INTERPRO:

INTERPRO:

INTERPRO:

PFAM:

PFAM:

PRIDE:

REFSEQ:

UNIPROT:

Operon

Name:

yidR

Operon arrangement:

Transcription unit	Promoter
yidR

RNA cis-regulatory element

Attenuation:	Translational

Elements in the selected gene context region unrelated to any object in RegulonDB

	Type	Name	Post Left	Post Right	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
	promoter	cbrAp6	3869314		forward	nd	[COMP-AINF]	[2]
	promoter	yidRp2	3869412		reverse	nd	[COMP-AINF]	[2]

Evidence
[COMP-AINF] Inferred computationally without human oversight

Reference(s)
[1] Fuhrer T., Zampieri M., Sevin DC., Sauer U., Zamboni N., 2017, Genomewide landscape of gene-metabolome associations in Escherichia coli., Mol Syst Biol 13(1):907
[2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78