RegulonDB RegulonDB 11.1: Gene Form
   

yebE gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ptrB yebE yebF exoX CpxR TSS_2188 TSS_2188 yebEp yebEp ptrBp ptrBp

Gene      
Name: yebE    Texpresso search in the literature
Synonym(s): ECK1847, EG11806, b1846
Genome position(nucleotides): 1929048 <-- 1929707
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 52.73
External database links:  
ASAP:
 ABE-0006137
ECHOBASE:
 EB1754
ECOLIHUB:
 yebE
OU-MICROARRAY:
 b1846
STRING:
 511145.b1846
COLOMBOS: yebE


Product      
Name: DUF533 domain-containing inner membrane protein YebE
Synonym(s): YebE
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 23.687
Isoelectric point: 5.118
Motif(s):
 
Type Positions Sequence Comment
33 -> 209 PGALGGLAGLLVANKSARKLLTKYGTNALLVGGGAVAGTVLWNKYKDKIRAAHQDEPQFGAQSTPLDERTARLILALVFAAKSDGHIDAKERAAIDQQLRGAGVEEQGRVLIEQAIEQPLDPQRLATGVRNEEEALEIYFLSCAAIDIDHFMERSYLNALGDALKIPQDVRDGIERD
52 -> 74 LLTKYGTNALLVGGGAVAGTVLW UniProt: Helical.
119 -> 119 I UniProt: In Ref. 5; AAA67956..

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0005887 - integral component of plasma membrane
GO:0016021 - integral component of membrane
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P33218
DIP:
 DIP-11808N
ECOCYC:
 EG11806-MONOMER
ECOLIWIKI:
 b1846
INTERPRO:
 IPR007486
INTERPRO:
 IPR029024
PFAM:
 PF04391
PRIDE:
 P33218
REFSEQ:
 NP_416360
SMR:
 P33218
UNIPROT:
 P33218


Operon      
Name: yebE         
Operon arrangement:
Transcription unit        Promoter
yebE


Transcriptional Regulation      
Display Regulation             
Activated by: CpxR


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2188 1929734 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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