RegulonDB RegulonDB 10.10: Gene Form
   

yihY gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

fabY yihY csqR yihX dtd terminator TSS_4585 TSS_4585 TSS_4584 TSS_4584 TSS_4583 TSS_4583 TSS_4582 TSS_4582 TSS_4581 TSS_4581 TSS_4580 (cluster) TSS_4580 (cluster) yihXp yihXp TSS_4579 TSS_4579

Gene      
Name: yihY    Texpresso search in the literature
Synonym(s): ECK3879, EG11851, b3886, rbn
Genome position(nucleotides): 4076146 --> 4077018 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 50.86
External database links:  
ASAP:
 ABE-0012688
ECHOBASE:
 EB1797
ECOLIHUB:
 yihY
OU-MICROARRAY:
 b3886
STRING:
 511145.b3886
COLOMBOS: yihY


Product      
Name: PF03631 family membrane protein YihY
Synonym(s): Rbn, YihY
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 32.839
Isoelectric point: 9.18
Motif(s):
 
Type Positions Sequence
101 -> 120 MTAVGACGLIVTALLLMYSI
29 -> 274 EDNMTTLAGNLAYVSLLSLVPLVAVVFALFAAFPMFSDVSIQLRHFIFANFLPATGDVIQRYIEQFVANSNKMTAVGACGLIVTALLLMYSIDSALNTIWRSKRARPKIYSFAVYWMILTLGPLLAGASLAISSYLLSLRWASDLNTVIDNVLRIFPLLLSWISFWLLYSIVPTIRVPNRDAIVGAFVAALLFEAGKKGFALYITMFPSYQLIYGVLAVIPILFVWVYWTWCIVLLGAEITVTLGE
141 -> 163 AVYWMILTLGPLLAGASLAISSY
244 -> 266 VLAVIPILFVWVYWTWCIVLLGA
39 -> 61 LAYVSLLSLVPLVAVVFALFAAF

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0005887 - integral component of plasma membrane
GO:0016021 - integral component of membrane
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
 EG11851-MONOMER
ECOLIWIKI:
 b3886
INTERPRO:
 IPR023679
INTERPRO:
 IPR017039
PANTHER:
 PTHR30213
PFAM:
 PF03631
PRIDE:
 P0A8K8
REFSEQ:
 NP_418322
UNIPROT:
 P0A8K8


Operon      
Name: yihXY-dtd-fabY         
Operon arrangement:
Transcription unit        Promoter
yihXY-dtd-fabY


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_4579 4075529 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4580 (cluster) 4076157 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4581 4076954 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4582 4076965 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4583 4076967 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4584 4076977 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4585 4077566 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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