RegulonDB RegulonDB 10.9: Gene Form
   

uspD gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

fpr uspD yiiS

Gene      
Name: uspD    Texpresso search in the literature
Synonym(s): ECK3915, EG11877, b3923, yiiT
Genome position(nucleotides): 4113293 --> 4113721 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
43.12
External database links:  
ASAP:
ABE-0012816
ECHOBASE:
EB1823
ECOLIHUB:
uspD
OU-MICROARRAY:
b3923
STRING:
511145.b3923
COLOMBOS: uspD


Product      
Name: universal stress protein D
Synonym(s): UspD, YiiT, stress protein involved in resistance to UV irradiation
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 16.293
Isoelectric point: 6.883
Motif(s):
 
Type Positions Sequence
3 -> 138 YKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQWPKTKLRIERGEMPETLLEIMQKEQCDLLVCGHHHSFINRLMPAYRGMINKMSADLLIVP

 

Classification:
Multifun Terms (GenProtEC)  
  5 - cell processes --> 5.5 - adaptations
  5 - cell processes --> 5.6 - protection --> 5.6.1 - radiation
Gene Ontology Terms (GO)  
cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
biological_process GO:0042594 - response to starvation
GO:0009411 - response to UV
GO:0000303 - response to superoxide
Note(s): Note(s): ...[more].
Evidence: [IMP] Inferred from mutant phenotype
Reference(s): [1] Gustavsson N., et al., 2002
[2] Nachin L., et al., 2005
External database links:  
DIP:
DIP-35856N
ECOCYC:
EG11877-MONOMER
ECOLIWIKI:
b3923
INTERPRO:
IPR006016
INTERPRO:
IPR014729
INTERPRO:
IPR006015
MODBASE:
P0AAB8
PANTHER:
PTHR46268
PFAM:
PF00582
PRIDE:
P0AAB8
PRODB:
PRO_000024193
REFSEQ:
NP_418358
SMR:
P0AAB8
UNIPROT:
P0AAB8


Operon      
Name: yiiS-uspD         
Operon arrangement:
Transcription unit        Promoter
yiiS-uspD


Transcriptional Regulation      
Display Regulation             
Activated by: YdeO


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Gustavsson N., Diez A., Nystrom T., 2002, The universal stress protein paralogues of Escherichia coli are co-ordinately regulated and co-operate in the defence against DNA damage., Mol Microbiol 43(1):107-17

 [2] Nachin L., Nannmark U., Nystrom T., 2005, Differential roles of the universal stress proteins of Escherichia coli in oxidative stress resistance, adhesion, and motility., J Bacteriol 187(18):6265-72


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