RegulonDB

Gene
Name:	yjbB
Synonym(s):	ECK4012, EG11919, b4020
Genome position(nucleotides):	4227731 --> 4229362 Genome Browser
Strand:	forward
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	55.33
External database links:

ASAP:	ABE-0013143
ECHOBASE:	EB1863
ECOLIHUB:	yjbB
OU-MICROARRAY:	b4020
STRING:	511145.b4020
COLOMBOS:	yjbB

Product

Name:

putative inorganic phosphate export protein YjbB

Synonym(s):

YjbB

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

inner membrane

Molecular weight:

59.467

Isoelectric point:

7.951

Motif(s):

Type	Positions	Sequence
	134 -> 154	GIGLGLILLALELIVQAVTPI
	196 -> 216	ATLTAAGIISFPVALCLVIGA
	48 -> 68	FCAGIGVTALVQSSNATTMLV
	99 -> 119	ILTFDLSWLSPLLIFIGVIFF
	159 -> 247	GVQVIFASLTGDILLDALIGAMFAIISYSSLAAVLLTATLTAAGIISFPVALCLVIGANLGSGLLAMLNNSAANAAARRVALGSLLFKL

Classification:

Multifun Terms (GenProtEC)
Multifun Terms (GenProtEC)		4 - transport --> 4.2 - Electrochemical potential driven transporters --> 4.2.A - Porters (Uni-, Sym- and Antiporters)
Gene Ontology Terms (GO)
	cellular_component	GO:0016020 - membrane GO:0005886 - plasma membrane GO:0005887 - integral component of plasma membrane GO:0016021 - integral component of membrane
	molecular_function	GO:0005315 - inorganic phosphate transmembrane transporter activity GO:0005436 - sodium:phosphate symporter activity
	biological_process	GO:0035435 - phosphate ion transmembrane transport GO:0035725 - sodium ion transmembrane transport GO:0044341 - sodium-dependent phosphate transport

Note(s):

Note(s): ...[more].

Reference(s):

[1] Jindal S., et al., 2019

External database links:

ECOCYC:

ECOLIWIKI:

INTERPRO:

INTERPRO:

PANTHER:

PFAM:

PRIDE:

REFSEQ:

SMR:

UNIPROT:

Operon

Name:

yjbB

Operon arrangement:

Transcription unit	Promoter
yjbB	yjbBp

RNA cis-regulatory element

Attenuation:	Transcriptional

Elements in the selected gene context region unrelated to any object in RegulonDB

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	TSS_4841	4227610	forward	nd	[RS-EPT-CBR]	[2]
promoter	TSS_4842	4227613	forward	nd	[RS-EPT-CBR]	[2]
promoter	TSS_4843	4227615	forward	nd	[RS-EPT-CBR]	[2]
promoter	TSS_4844	4229853	reverse	nd	[RS-EPT-CBR]	[2]
promoter	TSS_4845	4229873	reverse	nd	[RS-EPT-CBR]	[2]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

Reference(s)
[1] Jindal S., Yang L., Day PJ., Kell DB., 2019, Involvement of multiple influx and efflux transporters in the accumulation of cationic fluorescent dyes by Escherichia coli., BMC Microbiol 19(1):195
[2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

Reference(s)

[1] Jindal S., Yang L., Day PJ., Kell DB., 2019, Involvement of multiple influx and efflux transporters in the accumulation of cationic fluorescent dyes by Escherichia coli., BMC Microbiol 19(1):195

[2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.