RegulonDB

Gene
Name:	adiY
Synonym(s):	ECK4109, EG11966, b4116
Genome position(nucleotides):	4337168 <-- 4337929 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	41.34
External database links:

ASAP:	ABE-0013479
CGSC:	35597
ECHOBASE:	EB1909
ECOLIHUB:	adiY
OU-MICROARRAY:	b4116
STRING:	511145.b4116
COLOMBOS:	adiY

Product

Name:

DNA-binding transcriptional activator AdiY

Synonym(s):

AdiY

Sequence:

Get amino acid sequence Fasta Format

Regulator Family:

AraC/XylS

Cellular location:

cytosol

Molecular weight:

29.007

Isoelectric point:

8.317

Motif(s):

Type	Positions	Sequence
	166 -> 187	SMVASCLCLSPSLLKKKLKSEN
	149 -> 246	DSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ
	213 -> 236	ISQVSQSCGYNSTSYFISVFKDFY
	169 -> 244	ASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYV

Classification:

Multifun Terms (GenProtEC)
		2 - information transfer --> 2.2 - RNA related --> 2.2.2 - Transcription related
		3 - regulation --> 3.1 - type of regulation --> 3.1.2 - transcriptional level --> 3.1.2.2 - activator
		3 - regulation --> 3.3 - genetic unit regulated --> 3.3.1 - operon
Gene Ontology Terms (GO)
	cellular_component	GO:0005829 - cytosol
	molecular_function	GO:0003677 - DNA binding GO:0003700 - DNA-binding transcription factor activity GO:0043565 - sequence-specific DNA binding
	biological_process	GO:0006355 - regulation of transcription, DNA-templated GO:0045893 - positive regulation of transcription, DNA-templated

Note(s):

Note(s): ...[more].

Evidence:

[GEA] Gene expression analysis
[HIFS] Human inference of function from sequence

Reference(s):

[1] Stim-Herndon KP., et al., 1996

External database links:

ECOCYC:

ECOLIWIKI:

INTERPRO:

INTERPRO:

INTERPRO:

INTERPRO:

MODBASE:

PFAM:

PRIDE:

PRINTS:

PRODB:

PROSITE:

PROSITE:

REFSEQ:

SMART:

UNIPROT:

Operon

Name:

adiY

Operon arrangement:

Transcription unit	Promoter
adiY	adiYp

Transcriptional Regulation
	Display Regulation
Repressed by:	H-NS

RNA cis-regulatory element

Attenuation:	Transcriptional

Elements in the selected gene context region unrelated to any object in RegulonDB

	Type	Name	Post Left	Post Right	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References

Reference(s)
[1] Stim-Herndon KP., Flores TM., Bennett GN., 1996, Molecular characterization of adiY, a regulatory gene which affects expression of the biodegradative acid-induced arginine decarboxylase gene (adiA) of Escherichia coli., Microbiology 142 ( Pt 5):1311-20