RegulonDB

Gene
Name:	wbbK
Synonym(s):	ECK2026, EG11985, b2032, yefI
Genome position(nucleotides):	2103391 <-- 2104509 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	31.9
External database links:

ASAP:	ABE-0006747
ECHOBASE:	EB1928
ECOLIHUB:	wbbK
OU-MICROARRAY:	b2032
STRING:	511145.b2032
COLOMBOS:	wbbK

Product

Name:

putative glycosyltransferase WbbK

Synonym(s):

WbbK, YefI

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

inner membrane

Molecular weight:

43.188

Isoelectric point:

9.341

Motif(s):

Type	Positions	Sequence
	189 -> 345	DSQFKNNPSELTIFYPAVPRVFKNYELIISAARKLKEQSNIKFLLTISGTENAYAKYIISLAEGLDNVHFLGYLDKEKIDHCYNISDIVCFPSRLETWGLPLSEAKERGKWVLASDFPFTRETLGSYEKKAFFDSNNDDMLVKLIIDFKKGNLKKDI

Classification:

Multifun Terms (GenProtEC)
Gene Ontology Terms (GO)
	cellular_component	GO:0016020 - membrane GO:0005886 - plasma membrane
	molecular_function	GO:0016757 - glycosyltransferase activity GO:0016740 - transferase activity
	biological_process	GO:0009103 - lipopolysaccharide biosynthetic process

Note(s):

Note(s): ...[more].

External database links:

CAZY:

DIP:

ECOCYC:

ECOLIWIKI:

INTERPRO:

MODBASE:

PFAM:

PRIDE:

REFSEQ:

UNIPROT:

Operon

Name:

wbbIJK

Operon arrangement:

Transcription unit	Promoter
wbbIJK

Elements in the selected gene context region unrelated to any object in RegulonDB

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	TSS_2379	2102902	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2380 (cluster)	2102949	reverse	nd	[RS-EPT-CBR]	[1]
promoter	insHp6	2103049	reverse	nd	[ICWHO]	[2]
promoter	insHp5	2103090	reverse	nd	[ICWHO]	[2]
promoter	insHp4	2103093	reverse	nd	[ICWHO]	[2]
promoter	TSS_2381	2103462	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2382	2103479	reverse	nd	[RS-EPT-CBR]	[1]
promoter	wbbKp4	2104606	reverse	nd	[ICWHO]	[2]
promoter	TSS_2383	2105007	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2384	2105046	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2385	2105457	reverse	nd	[RS-EPT-CBR]	[1]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates
[ICWHO] Inferred computationally without human oversight

Reference(s)
[1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.
[2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

Reference(s)

[1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

[2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78