RegulonDB RegulonDB 10.8: Gene Form
   

yohF gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

mdtQ yohF yohD yohP terminator TSS_2453 TSS_2453

Gene      
Name: yohF    Texpresso search in the literature
Synonym(s): ECK2130, EG12019, b2137, yohE
Genome position(nucleotides): 2226509 <-- 2227270 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
55.12
External database links:  
ASAP:
ABE-0007062
ECHOBASE:
EB1955
OU-MICROARRAY:
b2137
PortEco:
yohF
STRING:
511145.b2137
COLOMBOS: yohF


Product      
Name: putative oxidoreductase YohF
Synonym(s): YohE, YohF, putative oxidoreductase with NAD(P)-binding Rossmann-fold domain
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 26.951
Isoelectric point: 4.94
Motif(s):
 
Type Positions Sequence
10 -> 243 SDSGIGKECALLLAQQGFDIGITWHSDEEGAKDTAREVVSHGVRAEIVQLDLGNLPEGALALEKLIQRLGRIDVLVNNAGAMTKAPFLDMAFDEWRKIFTVDVDGAFLCSQIAARQMVKQGQGGRIINITSVHEHTPLPDASAYTAAKHALGGLTKAMALELVRHKILVNAVAPGAIATPMNGMDDSDVKPDAEPSIPLRRFGATHEIASLVVWLCSEGANYTTGQSLIVDGGF
6 -> 30 IITASDSGIGKECALLLAQQGFDIG

 

Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism --> 1.1 - carbon utilization
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0016491 - oxidoreductase activity
biological_process GO:0055114 - oxidation-reduction process
Note(s): Note(s): ...[more].
Reference(s): [1] Paradis-Bleau C., et al., 2014
External database links:  
DIP:
DIP-12806N
ECOCYC:
EG12019-MONOMER
ECOLIWIKI:
b2137
INTERPRO:
IPR036291
INTERPRO:
IPR020904
INTERPRO:
IPR002347
MODBASE:
P33368
PANTHER:
PTHR24322
PDB:
6OZ7
PFAM:
PF13561
PRIDE:
P33368
PRINTS:
PR00080
PRINTS:
PR00081
PROSITE:
PS00061
REFSEQ:
NP_416641
SMR:
P33368
UNIPROT:
P33368


Operon      
Name: yohF         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2453 2227296 reverse nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Paradis-Bleau C., Kritikos G., Orlova K., Typas A., Bernhardt TG., 2014, A genome-wide screen for bacterial envelope biogenesis mutants identifies a novel factor involved in cell wall precursor metabolism., PLoS Genet 10(1):e1004056

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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