RegulonDB RegulonDB 10.9: Gene Form
   

yjjI gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yjjI yjjW yjjV deoC yjjU DeoR ModE CRP CytR CytR CytR CRP Fis DeoR DeoR DeoR DeoR DeoR terminator TSS_5164 TSS_5164 TSS_5163 TSS_5163 deoCp2 deoCp2 TSS_5162 TSS_5162 deoCp1 deoCp1

Gene      
Name: yjjI    Texpresso search in the literature
Synonym(s): ECK4372, EG12171, b4380, yjjH
Genome position(nucleotides): 4615515 <-- 4617065 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
53.13
External database links:  
ASAP:
ABE-0014361
ECHOBASE:
EB2089
ECOLIHUB:
yjjI
OU-MICROARRAY:
b4380
STRING:
511145.b4380
COLOMBOS: yjjI


Product      
Name: DUF3029 domain-containing protein YjjI
Synonym(s): YjjH, YjjI
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 58.02
Isoelectric point: 6.008
Motif(s):
 
Type Positions Sequence
22 -> 504 LSPEQKRHFLALEAENNLPYPQLPAEARRALDEGVICDMFEGHAPYKPRYVLPDYARFLANGSEWLELEGAKDLDDALSLLTILYHHVPSVTSMPVYLGQLDALLQPYVRILTQDEIDVRIKRFWRYLDRTLPDAFMHANIGPSDSPITRAILRADAELKQVSPNLTFIYDPEITPDDLLLEVAKNICECSKPHIANGPVHDKIFTKGGYGIVSCYNSLPLAGGGSTLVRLNLKAIAERSESLDDFFTRTLPHYCQQQIAIIDARCEFLYQQSHFFENSFLVKEGLINPERFVPMFGMYGLAEAVNLLCEKEGIAARYGKEAAANEVGYRISAQLAEFVANTPVKYGWQKRAMLHAQSGISSDIGTTPGARLPYGDEPDPITHLQTVAPHHAYYYSGISDILTLDETIKRNPQALVQLCLGAFKAGMREFTANVSGNDLVRVTGYMVRLSDLEKYRAEGSRTNTTWLGEEAARNTRILERQPR

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0005515 - protein binding
biological_process GO:0006807 - nitrogen compound metabolic process
GO:0009061 - anaerobic respiration
Note(s): Note(s): ...[more].
Evidence: [IHBCE] Inferred by a human based on computational evidence
Reference(s): [1] Kacmarczyk T., et al., 2011
External database links:  
DIP:
DIP-12653N
ECOCYC:
EG12171-MONOMER
ECOLIWIKI:
b4380
INTERPRO:
IPR016905
MODBASE:
P37342
PFAM:
PF11230
PRIDE:
P37342
REFSEQ:
NP_418797
UNIPROT:
P37342


Operon      
Name: yjjI         
Operon arrangement:
Transcription unit        Promoter
yjjI


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_5162 4617277 forward nd [RS-EPT-CBR] [2]
  promoter TSS_5163 4617293 forward nd [RS-EPT-CBR] [2]
  promoter TSS_5164 4617361 forward nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Kacmarczyk T., Waltman P., Bate A., Eichenberger P., Bonneau R., 2011, Comparative microbial modules resource: generation and visualization of multi-species biclusters., PLoS Comput Biol 7(12):e1002228

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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