RegulonDB

Gene
Name:	yjjI
Synonym(s):	ECK4372, EG12171, b4380, yjjH
Genome position(nucleotides):	4615515 <-- 4617065 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	53.13
External database links:

ASAP:	ABE-0014361
ECHOBASE:	EB2089
ECOLIHUB:	yjjI
OU-MICROARRAY:	b4380
STRING:	511145.b4380
COLOMBOS:	yjjI

Product

Name:

DUF3029 domain-containing protein YjjI

Synonym(s):

YjjH, YjjI

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

cytosol

Molecular weight:

58.02

Isoelectric point:

6.008

Motif(s):

Type	Positions	Sequence
	22 -> 504	LSPEQKRHFLALEAENNLPYPQLPAEARRALDEGVICDMFEGHAPYKPRYVLPDYARFLANGSEWLELEGAKDLDDALSLLTILYHHVPSVTSMPVYLGQLDALLQPYVRILTQDEIDVRIKRFWRYLDRTLPDAFMHANIGPSDSPITRAILRADAELKQVSPNLTFIYDPEITPDDLLLEVAKNICECSKPHIANGPVHDKIFTKGGYGIVSCYNSLPLAGGGSTLVRLNLKAIAERSESLDDFFTRTLPHYCQQQIAIIDARCEFLYQQSHFFENSFLVKEGLINPERFVPMFGMYGLAEAVNLLCEKEGIAARYGKEAAANEVGYRISAQLAEFVANTPVKYGWQKRAMLHAQSGISSDIGTTPGARLPYGDEPDPITHLQTVAPHHAYYYSGISDILTLDETIKRNPQALVQLCLGAFKAGMREFTANVSGNDLVRVTGYMVRLSDLEKYRAEGSRTNTTWLGEEAARNTRILERQPR

Classification:

Multifun Terms (GenProtEC)
Gene Ontology Terms (GO)
	cellular_component	GO:0005829 - cytosol
	molecular_function	GO:0005515 - protein binding
	biological_process	GO:0006807 - nitrogen compound metabolic process GO:0009061 - anaerobic respiration

Note(s):

Note(s): ...[more].

Evidence:

[IHBCE] Inferred by a human based on computational evidence

Reference(s):

[1] Kacmarczyk T., et al., 2011

External database links:

DIP:

ECOCYC:

ECOLIWIKI:

INTERPRO:

MODBASE:

PFAM:

PRIDE:

REFSEQ:

UNIPROT:

Operon

Name:

yjjI

Operon arrangement:

Transcription unit	Promoter
yjjI

Elements in the selected gene context region unrelated to any object in RegulonDB

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	TSS_5162	4617277	forward	nd	[RS-EPT-CBR]	[2]
promoter	TSS_5163	4617293	forward	nd	[RS-EPT-CBR]	[2]
promoter	TSS_5164	4617361	forward	nd	[RS-EPT-CBR]	[2]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

Reference(s)
[1] Kacmarczyk T., Waltman P., Bate A., Eichenberger P., Bonneau R., 2011, Comparative microbial modules resource: generation and visualization of multi-species biclusters., PLoS Comput Biol 7(12):e1002228
[2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

Reference(s)

[1] Kacmarczyk T., Waltman P., Bate A., Eichenberger P., Bonneau R., 2011, Comparative microbial modules resource: generation and visualization of multi-species biclusters., PLoS Comput Biol 7(12):e1002228

[2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.