RegulonDB RegulonDB 10.9: Gene Form
   

yhiJ gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yhiJ yhiL yhiM yhiY GadE yhiMp11 yhiMp11 yhiMp9 yhiMp9 yhiMp yhiMp yhiMp10 yhiMp10 yhiJp6 yhiJp6 TSS_4090 (cluster) TSS_4090 (cluster) TSS_4089 TSS_4089

Gene      
Name: yhiJ    Texpresso search in the literature
Synonym(s): ECK3473, EG12225, b3488
Genome position(nucleotides): 3630968 <-- 3632590 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
37.46
External database links:  
ASAP:
ABE-0011387
ECHOBASE:
EB2138
ECOLIHUB:
yhiJ
OU-MICROARRAY:
b3488
STRING:
511145.b3488
COLOMBOS: yhiJ


Product      
Name: DUF4049 domain-containing protein YhiJ
Synonym(s): YhiJ
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 61.164
Isoelectric point: 6.504
Motif(s):
 
Type Positions Sequence
194 -> 503 TSTRPTYFGDTDGSVGAVLFALFATGHLGIMAEGENFLSQLLNIEDEVLNVLLRENFNEQLNTNVNTIISILNRRDIILESLQPYLVINKDAVTPCTFLGDQTGDRFSNICGDQFIIDLLKRIMSINENVHVLAGNHETNCNGNYMQNFTRMKPLDEDTYSGIKDYPVCFYDPKYKIMANHHGITFDDQRKRYIIGPITVSIDEMTNALDPVELAAIINKKHHAIINGKKFKTSRAISCRSFNRYFSVSTDYRPKLEALLACSQMLGINQVVAHNGNGGRERIGETGTVLGLNARDSKHAGRMFSMHNCQ

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
biological_process GO:0019310 - inositol catabolic process
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
EG12225-MONOMER
ECOLIWIKI:
b3488
INTERPRO:
IPR025123
PFAM:
PF13258
PRIDE:
P37627
REFSEQ:
NP_417945
UNIPROT:
P37627


Operon      
Name: yhiJ         
Operon arrangement:
Transcription unit        Promoter
yhiJ


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_4089 3630839 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_4090 (cluster) 3630930 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter yhiJp6 3632595 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter yhiMp10 3634635 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter yhiMp9 3634783 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter yhiMp11 3634817 forward Similarity to the consensus
Read more >
[ICWHO] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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