RegulonDB RegulonDB 10.9: Gene Form
   

yhiL gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yhiJ yhiL yhiM GadE yhiMp11 yhiMp11 yhiMp9 yhiMp9 yhiMp yhiMp yhiMp10 yhiMp10 yhiJp6 yhiJp6

Gene      
Name: yhiL    Texpresso search in the literature
Synonym(s): ECK3474, ECK3475, EG12227, b3489, b3490, b4660, yhiK
Type: Pseudo Gene
Genome position(nucleotides): 3632852 <-- 3634458 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
34.91
External database links:  
ASAP:
ABE-0285133
ASAP:
ABE-0011393
ASAP:
ABE-0011391
ECHOBASE:
EB2139
ECHOBASE:
EB4381
ECOLIHUB:
yhiK
ECOLIHUB:
yhiL
OU-MICROARRAY:
b3490
OU-MICROARRAY:
b3489
STRING:
316407.85676554
UNIPROT:
P37629
COLOMBOS: yhiL


Product      
Name: DUF4049 domain-containing protein YhiL
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 8.829
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
EG12227-MONOMER
ECOLIWIKI:
b3490
INTERPRO:
IPR029052
INTERPRO:
IPR025123
PFAM:
PF13258
PRIDE:
P37629
REFSEQ:
NP_417947
SMR:
P37629
UNIPROT:
P37629


Operon      
Name: yhiL         
Operon arrangement:
Transcription unit        Promoter
yhiL


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yhiJp6 3632595 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yhiMp10 3634635 forward Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yhiMp9 3634783 forward Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yhiMp11 3634817 forward Similarity to the consensus
Read more >
[ICWHO] [1]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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