RegulonDB RegulonDB 10.9: Gene Form
   

yhiN gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

pitA yhiN yhiM pitAp pitAp yhiNp6 yhiNp6

Gene      
Name: yhiN    Texpresso search in the literature
Synonym(s): ECK3477, EG12229, b3492
Genome position(nucleotides): 3636208 <-- 3637410 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
55.11
External database links:  
ASAP:
ABE-0011402
ECHOBASE:
EB2141
ECOLIHUB:
yhiN
OU-MICROARRAY:
b3492
STRING:
511145.b3492
COLOMBOS: yhiN


Product      
Name: putative oxidoreductase YhiN
Synonym(s): YhiN
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 43.741
Isoelectric point: 6.173
Motif(s):
 
Type Positions Sequence
5 -> 392 DAIIIGAGAAGMFCSALAGQAGRRVLLIDNGKKPGRKILMSGGGRCNFTNLYVEPGAYLSQNPHFCKSALARFTQWDFIDLVNKHGIAWHEKTLGQLFCDDSAQQIVDMLVDECEKGNVTFRLRSEVLSVAKDETGFTLDLNGMTVGCEKLVIATGGLSMPGLGASPFGYKIAEQFGLNVLPTRAGLVPFTLHKPLLEELQVLAGVAVPSVITAENGTVFRENLLFTHRGLSGPAVLQISSYWQPGEFVSINLLPDVDLETFLNEQRNAHPNQSLKNTLAVHLPKRLVERLQQLGQIPDVSLKQLNVRDQQALISTLTDWRVQPNGTEGYRTAEVTLGGVDTNELSSRTMEARKVPGLYFIGEVMDVTGWLGGYNFQWAWSSAWACAQ

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
Reference(s): [1] Peters JE., et al., 2014
External database links:  
DIP:
DIP-12368N
ECOCYC:
EG12229-MONOMER
ECOLIWIKI:
b3492
INTERPRO:
IPR023166
INTERPRO:
IPR036188
INTERPRO:
IPR004792
MODBASE:
P37631
PANTHER:
PTHR42887
PFAM:
PF03486
PRIDE:
P37631
REFSEQ:
NP_417949
SMR:
P37631
UNIPROT:
P37631


Operon      
Name: yhiN         
Operon arrangement:
Transcription unit        Promoter
yhiN


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yhiNp6 3637500 reverse Similarity to the consensus
Read more >
[ICWHO] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Peters JE., Fricker AD., Kapili BJ., Petassi MT., 2014, Heteromeric transposase elements: generators of genomic islands across diverse bacteria., Mol Microbiol 93(6):1084-92

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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