RegulonDB RegulonDB 11.1: Gene Form
   

ybcF gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ylbE purK ybcF ylbF purE

Gene      
Name: ybcF    Texpresso search in the literature
Synonym(s): ECK0514, EG12384, arcC, b0521
Genome position(nucleotides): 550439 --> 551332
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 56.94
External database links:  
ASAP:
 ABE-0001791
ECHOBASE:
 EB2285
ECOLIHUB:
 ybcF
OU-MICROARRAY:
 b0521
STRING:
 511145.b0521
COLOMBOS: ybcF


Product      
Name: putative carbamate kinase
Synonym(s): ArcC, YbcF
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 31.644
Isoelectric point: 4.635
Motif(s):
 
Type Positions Sequence Comment
2 -> 264 KTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARSYRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVICSGGGGVPVTDDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIRHATPDELAPFAKADGSMGPNVTAV
279 -> 297 ALSRIEETLAGEAGTCISL UniProt: In Ref. 5; X12982..

 
Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism --> 1.8 - metabolism of other compounds
Gene Ontology Terms (GO)  
cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
molecular_function GO:0016740 - transferase activity
GO:0016301 - kinase activity
GO:0000166 - nucleotide binding
GO:0005524 - ATP binding
GO:0008804 - carbamate kinase activity
biological_process GO:0006525 - arginine metabolic process
GO:0009442 - allantoin assimilation pathway
GO:0016310 - phosphorylation
GO:0035975 - carbamoyl phosphate catabolic process
GO:0019546 - arginine deiminase pathway
Note(s): Note(s): ...[more].
Reference(s): [1] Paradis-Bleau C., et al., 2014
External database links:  
ALPHAFOLD:
 P37306
ECOCYC:
 EG12384-MONOMER
ECOLIWIKI:
 b0521
INTERPRO:
 IPR036393
INTERPRO:
 IPR003964
INTERPRO:
 IPR001048
MODBASE:
 P37306
PANTHER:
 PTHR30409
PFAM:
 PF00696
PRIDE:
 P37306
PRODB:
 PRO_000022125
REFSEQ:
 NP_415054
SMR:
 P37306
SWISSMODEL:
 P37306
UNIPROT:
 P37306


Operon      
Name: fdrA-ylbEF-ybcF         
Operon arrangement:
Transcription unit        Promoter
fdrA-ylbEF-ybcF


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Paradis-Bleau C., Kritikos G., Orlova K., Typas A., Bernhardt TG., 2014, A genome-wide screen for bacterial envelope biogenesis mutants identifies a novel factor involved in cell wall precursor metabolism., PLoS Genet 10(1):e1004056

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