RegulonDB RegulonDB 10.9: Gene Form
   

yhdW gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yhdX yhdW yhdV NtrC NtrC yhdWp yhdWp

Gene      
Name: yhdW    Texpresso search in the literature
Synonym(s): ECK3255, EG12834, b3268
Type: Pseudo Gene
Genome position(nucleotides): 3419042 --> 3420066 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
49.76
External database links:  
ASAP:
ABE-0010731
ECHOBASE:
EB2683
ECOLIHUB:
yhdW
OU-MICROARRAY:
b3268
STRING:
316407.85676059
UNIPROT:
P45766
COLOMBOS: yhdW


Product      
Name: putative ABC transporter periplasmic binding protein YhdW
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 12.574
Motif(s):
 
Type Positions Sequence
1 -> 19 MKKMMIATLAAASVLLAVA

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0042597 - periplasmic space
biological_process GO:0006865 - amino acid transport
Note(s): Note(s): ...[more].
Reference(s): [1] Jindal S., et al., 2019
External database links:  
ECOCYC:
YHDW-MONOMER
ECOLIWIKI:
b3268
INTERPRO:
IPR001638
INTERPRO:
IPR018313
MODBASE:
P45766
PFAM:
PF00497
PRIDE:
P45766
PROSITE:
PS01039
REFSEQ:
NP_417734
SMART:
SM00062
SMR:
P45766
UNIPROT:
P45766


Operon      
Name: yhdWXYZ         
Operon arrangement:
Transcription unit        Promoter
yhdWXYZ


Transcriptional Regulation      
Display Regulation             
Activated by: NtrC


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Jindal S., Yang L., Day PJ., Kell DB., 2019, Involvement of multiple influx and efflux transporters in the accumulation of cationic fluorescent dyes by Escherichia coli., BMC Microbiol 19(1):195


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