RegulonDB RegulonDB 11.1: Gene Form
   

aspU gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

dkgB rrfH aspU yafC NsrR NsrR terminator anti-terminator anti-anti-terminator dkgBp dkgBp TSS_421 TSS_421 TSS_420 TSS_420

Gene      
Name: aspU    Texpresso search in the literature
Synonym(s): ECK0206, EG30024, b0206
Genome position(nucleotides): 228928 --> 229004
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 63.64
External database links:  
ASAP:
 ABE-0000688
CGSC:
 988
ECHOBASE:
 EB4187
ECOLIHUB:
 aspU
OU-MICROARRAY:
 b0206
COLOMBOS: aspU


Product      
Name: tRNA-Asp(GUC)
Synonym(s): tRNAaspU
Type: tRNAs
Cellular location: cytosol
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related --> 2.2.5 - tRNA
Gene Ontology Terms (GO)  
cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
molecular_function GO:0030533 - triplet codon-amino acid adaptor activity
Note(s): Note(s): ...[more].
Evidence: [AS-TAS] Traceable author statement
Reference(s): [1] Siekevitz P., et al., 1981
External database links:  
ECOCYC:
 aspU-tRNA
ECOLIWIKI:
 b0206


Operon      
Name: aspU         
Operon arrangement:
Transcription unit        Promoter
aspU


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_420 228879 forward nd [RS-EPT-CBR] [2]
  promoter TSS_421 228928 forward nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Siekevitz P., Zamecnik PC., 1981, Ribosomes and protein synthesis., J Cell Biol 91(3 Pt 2):53s-65s

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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