RegulonDB RegulonDB 11.1: Gene Form
   

thrV gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

rrfF rrfD thrV rrfFp2 rrfFp2

Gene      
Name: thrV    Texpresso search in the literature
Synonym(s): ECK3260, EG30103, b3273
Genome position(nucleotides): 3423580 <-- 3423655
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 56.58
External database links:  
ASAP:
 ABE-0010742
CGSC:
 105
ECHOBASE:
 EB4266
ECOLIHUB:
 thrV
OU-MICROARRAY:
 b3273
COLOMBOS: thrV


Product      
Name: tRNA-Thr(GGU)
Synonym(s): tRNAThr1(GGU), tRNAthrV
Type: tRNAs
Cellular location: cytosol
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related --> 2.2.5 - tRNA
Gene Ontology Terms (GO)  
cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
molecular_function GO:0030533 - triplet codon-amino acid adaptor activity
Note(s): Note(s): ...[more].
Evidence: [AS-TAS] Traceable author statement
Reference(s): [1] Comer MM. 1982
[2] Li S., et al., 2013
[3] Siekevitz P., et al., 1981
External database links:  
ECOCYC:
 thrV-tRNA
ECOLIWIKI:
 b3273


Operon      
Name: rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF         
Operon arrangement:
Transcription unit        Promoter
rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF
rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF
rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF


Transcriptional Regulation      
Display Regulation             
Activated by: Fis
Repressed by: H-NS, Lrp


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter rrfFp2 3423707 reverse nd [COMP-AINF] [4]


Evidence    

 [COMP-AINF] Inferred computationally without human oversight


Reference(s)    

 [1] Comer MM., 1982, Threonine tRNAs and their genes in Escherichia coli., Mol Gen Genet 187(1):132-7

 [2] Li S., Limbach PA., 2013, Mass spectrometry sequencing of transfer ribonucleic acids by the comparative analysis of RNA digests (CARD) approach., Analyst 138(5):1386-94

 [3] Siekevitz P., Zamecnik PC., 1981, Ribosomes and protein synthesis., J Cell Biol 91(3 Pt 2):53s-65s

 [4] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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