RegulonDB RegulonDB 10.9: Gene Form
   

ryjA gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ghxP soxR soxS ryjA AcrR SoxR SoxS SoxR anti-terminator anti-anti-terminator anti-anti-terminator anti-terminator terminator anti-anti-terminator anti-terminator terminator yjcDp5 yjcDp5 ghxPp ghxPp yjcDp6 yjcDp6 yjcDp7 yjcDp7 ryjAp ryjAp soxRp soxRp soxSp soxSp

Gene      
Name: ryjA    Texpresso search in the literature
Synonym(s): ECK4056, G0-8875, b4459, psrA24, sraL
Genome position(nucleotides): 4277926 <-- 4278066 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
51.77
Reference(s): [1] Argaman L., et al., 2001
External database links:  
ASAP:
ABE-0047277
ECHOBASE:
EB4541
ECOLIHUB:
ryjA
COLOMBOS: ryjA


Product      
Name: small RNA RyjA
Synonym(s): PsrA24, RyjA, SraL
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
SRAL-RNA
ECOLIWIKI:
b4459


Operon      
Name: ryjA         
Operon arrangement:
Transcription unit        Promoter
ryjA


RNA cis-regulatory element    
Attenuation: Transcriptional


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yjcDp7 4278314 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter yjcDp6 4278318 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter yjcDp5 4278466 forward Similarity to the consensus
Read more >
[ICWHO] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Argaman L., Hershberg R., Vogel J., Bejerano G., Wagner EG., Margalit H., Altuvia S., 2001, Novel small RNA-encoding genes in the intergenic regions of Escherichia coli., Curr Biol 11(12):941-50

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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