RegulonDB RegulonDB 11.1: Gene Form
   

rttR gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ychS rttR tpr tyrV Cis-reg Cis-reg Cis-reg tprp1 tprp1

Gene      
Name: rttR    Texpresso search in the literature
Synonym(s): ECK1223, G0-9609, b4425, rtT
Genome position(nucleotides): 1287066 <-- 1287236
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 57.89
External database links:  
ASAP:
 ABE-0047246
ECHOBASE:
 EB4293
ECOLIHUB:
 rttR
COLOMBOS: rttR


Product      
Name: small RNA RttR
Synonym(s): rttR, small RNA processed from tyrT transcript
Type: small RNA
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
 RNA0-164
ECOLIWIKI:
 b4425


Operon      
Name: rttR         
Operon arrangement:
Transcription unit        Promoter
rttR


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter tprp1 1287188 reverse nd [COMP-AINF] [1]


Evidence    

 [COMP-AINF] Inferred computationally without human oversight


Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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