RegulonDB RegulonDB 10.10: Gene Form
   

tisA gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

istR tisA tisB istR-1 ysdE LexA  IstR-2  IstR-1  IstR-2  IstR-1 terminator anti-anti-terminator anti-terminator anti-anti-terminator anti-terminator terminator TSS_4252 TSS_4252 tisBp tisBp istR-2p istR-2p istR-1p istR-1p

Gene      
Name: tisA    Texpresso search in the literature
Synonym(s): ECK4426, G0-9961, b4617, ysdA
Type: Phantom Gene
Genome position(nucleotides): 3853443 --> 3853556 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
54.39
Note(s): The originally annotated tisA open reading frame is not translated Darfeuille F,2007.
External database links:  
ECOLIHUB:
tisA
COLOMBOS: tisA


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_4252 3853442 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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