RegulonDB

RegulonDB RegulonDB 10.9: Gene Form

yaiS gene in Escherichia coli K-12 genome

Gene local context to scale (view description)

Gene
Name:	yaiS
Synonym(s):	ECK0361, G6216, b0364
Genome position(nucleotides):	384059 <-- 384616 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	43.37
External database links:

ASAP:	ABE-0001249
ECHOBASE:	EB3087
ECOLIHUB:	yaiS
OU-MICROARRAY:	b0364
STRING:	511145.b0364
COLOMBOS:	yaiS

Product

Name:

putative deacetylase YaiS

Synonym(s):

YaiS

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

cytosol

Molecular weight:

20.487

Isoelectric point:

6.795

Motif(s):

Type	Positions	Sequence
	20 -> 141	LAIGAHPDDIELGCGASLARLAQKGIYIAAVVMTTGNSGTDGIIDRHEESRNALKILGCHQTIHLNFADTRAHLQLNDMISALEDIIKNQIPSDVEIMRVYTMHDADRHQDHLAVYQASMVA

Classification:

Multifun Terms (GenProtEC)
Gene Ontology Terms (GO)
	cellular_component	GO:0005829 - cytosol
	molecular_function	GO:0016787 - hydrolase activity GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides

Note(s):

Note(s): ...[more].

Reference(s):

[1] Paradis-Bleau C., et al., 2014

External database links:

DIP:

ECOCYC:

ECOLIWIKI:

INTERPRO:

INTERPRO:

MODBASE:

PANTHER:

PFAM:

PRIDE:

REFSEQ:

UNIPROT:

Operon

Name:

yaiS

Operon arrangement:

Transcription unit	Promoter
yaiS

Elements in the selected gene context region unrelated to any object in RegulonDB

	Type	Name	Post Left	Post Right	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
	promoter	yaiPp5	383985		reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 7.795. P-value: 8.461e-6 Read more >	[ICWHO]	[2]
	promoter	yaiSp12	384701		reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 4.1. P-value: 3.869e-5 Read more >	[ICWHO]	[2]
	promoter	yaiSp9	384708		reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: poor homology. Score: 3.175. P-value: 7.713e-5 Read more >	[ICWHO]	[2]
	promoter	yaiSp13	384738		reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 4.696. P-value: 9.075e-6 Read more >	[ICWHO]	[2]
	promoter	yaiSp14	384830		reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 5.978. P-value: 1.515e-6 Read more >	[ICWHO]	[2]

Evidence
[ICWHO] Inferred computationally without human oversight

Reference(s)
[1] Paradis-Bleau C., Kritikos G., Orlova K., Typas A., Bernhardt TG., 2014, A genome-wide screen for bacterial envelope biogenesis mutants identifies a novel factor involved in cell wall precursor metabolism., PLoS Genet 10(1):e1004056
[2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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