RegulonDB RegulonDB 11.1: Gene Form
   

ybhP gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

clsB ybhN ybhP ybhQ ybhR ybhQp ybhQp ybhNp5 ybhNp5

Gene      
Name: ybhP    Texpresso search in the literature
Synonym(s): ECK0779, G6407, b0790
Genome position(nucleotides): 823736 <-- 824497
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 55.51
External database links:  
ASAP:
 ABE-0002696
ECHOBASE:
 EB3436
ECOLIHUB:
 ybhP
OU-MICROARRAY:
 b0790
STRING:
 511145.b0790
COLOMBOS: ybhP


Product      
Name: endonuclease/exonuclease/phosphatase domain-containing protein YbhP
Synonym(s): YbhP
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane,cytosol
Molecular weight: 28.79
Isoelectric point: 7.117
Motif(s):
 
Type Positions Sequence Comment
33 -> 244 LRDAVRTVSADIVCLQEVMGAHEVHPLHVENWPDTSHYEFLADTMWSDFAYGRNAVYPEGHHGNAVLSRYPIEHYENRDVSVDGAEKRGVLYCRIVPPMTGKAIHVMCVHLGLREAHRQAQLAMLAEWVNELPDGEPVLVAGDFNDWRQKANHPLKVQAGLDEIFTRAHGRPARTFPVQFPLLRLDRIYVKNASASAPTALPLRTWRHLSDH

 
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.1 - DNA related --> 2.1.5 - DNA degradation
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
GO:0005886 - plasma membrane
molecular_function GO:0003824 - catalytic activity
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P0AAW1
DIP:
 DIP-48150N
ECOCYC:
 G6407-MONOMER
ECOLIWIKI:
 b0790
INTERPRO:
 IPR005135
INTERPRO:
 IPR036691
MODBASE:
 P0AAW1
PFAM:
 PF03372
PRIDE:
 P0AAW1
REFSEQ:
 NP_415311
SMR:
 P0AAW1
UNIPROT:
 P0AAW1


Operon      
Name: ybhP-clsB-ybhN         
Operon arrangement:
Transcription unit        Promoter
ybhP-clsB-ybhN


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter ybhNp5 822648 reverse nd [COMP-AINF] [1]


Evidence    

 [COMP-AINF] Inferred computationally without human oversight


Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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