RegulonDB RegulonDB 11.1: Gene Form
   

yliL gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

opgE rybA yliL mntS ybiPp5 ybiPp5

Gene      
Name: yliL    Texpresso search in the literature
Synonym(s): ECK0805, G6419, b0816
Type: Phantom Gene
Genome position(nucleotides): 852671 --> 852940
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 50.74
Note(s): Recent attempts to find either mRNA or protein expression of yliL have been unsuccessful, indicating that this ORF may have been a spurious annotation Waters LS,2011.
External database links:  
ASAP:
 ABE-0002789
ECHOBASE:
 EB4328
ECOLIHUB:
 yliL
ECOO157CYC:
 Z1038
OU-MICROARRAY:
 b0816
COLOMBOS: yliL


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter ybiPp5 852626 reverse nd [COMP-AINF] [1]
  promoter TSS_978 853047 reverse nd [RS-EPT-CBR] [2]
  promoter mntRp6 853080 forward nd [COMP-AINF] [1]
  promoter mntRp5 853083 forward nd [COMP-AINF] [1]
  promoter mntRp4 853135 forward nd [COMP-AINF] [1]
  promoter TSS_979 853137 forward nd [RS-EPT-CBR] [2]


Evidence    

 [COMP-AINF] Inferred computationally without human oversight

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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