RegulonDB

RegulonDB RegulonDB 10.9: Gene Form

ybiV gene in Escherichia coli K-12 genome

Gene local context to scale (view description)

Gene
Name:	ybiV
Synonym(s):	ECK0812, G6425, b0822, supH
Genome position(nucleotides):	859213 <-- 860028 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	46.69
External database links:

ASAP:	ABE-0002807
ECHOBASE:	EB3111
ECOLIHUB:	ybiV
OU-MICROARRAY:	b0822
STRING:	511145.b0822
COLOMBOS:	ybiV

Product

Name:

sugar phosphatase YbiV

Synonym(s):

HAD12, SupH, YbiV

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

cytosol

Molecular weight:

30.413

Isoelectric point:

6.313

Motif(s):

Type	Positions	Sequence
	6 -> 259	IVTDMDGTFLNDAKTYNQPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELKDEISFVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQLNFVACGLQSAYVSENAPEAFVALMAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQIPLVIDKLHVALDGIMKPVTSGFGFIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSGNDAEMLKMARYSFAMGNAAENIKQIARYATDDNNHEGALNVI
	44 -> 45	SG

Classification:

Multifun Terms (GenProtEC)
Gene Ontology Terms (GO)
	cellular_component	GO:0005829 - cytosol
	molecular_function	GO:0050286 - sorbitol-6-phosphatase activity GO:0103026 - fructose-1-phosphatase activity GO:0016787 - hydrolase activity GO:0046872 - metal ion binding GO:0016791 - phosphatase activity GO:0050308 - sugar-phosphatase activity GO:0000287 - magnesium ion binding
	biological_process	GO:0016311 - dephosphorylation

Note(s):

Note(s): ...[more].

External database links:

ECOCYC:

ECOLIWIKI:

INTERPRO:

INTERPRO:

INTERPRO:

INTERPRO:

MODBASE:

PDB:

PDB:

PDB:

PDB:

PFAM:

PRIDE:

PRODB:

PROSITE:

REFSEQ:

SMR:

UNIPROT:

Operon

Name:

ybiV

Operon arrangement:

Transcription unit	Promoter
ybiV

Elements in the selected gene context region unrelated to any object in RegulonDB

	Type	Name	Post Left	Post Right	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
	promoter	ybiUp5	859100		reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 4.306. P-value: 4.406e-5 Read more >	[ICWHO]	[1]
	promoter	ybiUp7	859104		reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 5.118. P-value: 1.637e-5 Read more >	[ICWHO]	[1]
	promoter	ybiUp6	859106		reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 5.043. P-value: 7.889e-6 Read more >	[ICWHO]	[1]
	promoter	ybiVp5	860088		reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 5.218. P-value: 7.811e-6 Read more >	[ICWHO]	[1]

Evidence
[ICWHO] Inferred computationally without human oversight

Reference(s)
[1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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