RegulonDB

Gene
Name:	rcdA
Synonym(s):	ECK0836, G6444, b0846, ybjK
Genome position(nucleotides):	887423 --> 887959 Genome Browser
Strand:	forward
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	51.58
External database links:

ASAP:	ABE-0002885
ECHOBASE:	EB3444
ECOLIHUB:	ybjK
OU-MICROARRAY:	b0846
STRING:	511145.b0846
COLOMBOS:	rcdA

Product

Name:

DNA-binding transcriptional regulator RcdA

Synonym(s):

RcdA, YbjK

Sequence:

Get amino acid sequence Fasta Format

Regulator Family:

TetR/AcrR

Cellular location:

cytosol

Molecular weight:

20.307

Isoelectric point:

6.795

Motif(s):

Type	Positions	Sequence
	7 -> 67	PQRREKIIQATLEAVKLYGIHAVTHRKIATLAGVPLGSMTYYFSGIDELLLEAFSSFTEIM
	13 -> 59	IIQATLEAVKLYGIHAVTHRKIATLAGVPLGSMTYYFSGIDELLLEA
	30 -> 49	THRKIATLAGVPLGSMTYYF

Classification:

Multifun Terms (GenProtEC)
Multifun Terms (GenProtEC)		3 - regulation --> 3.1 - type of regulation --> 3.1.4 - unknown
Gene Ontology Terms (GO)
	cellular_component	GO:0005829 - cytosol
	molecular_function	GO:0003677 - DNA binding GO:0003700 - DNA-binding transcription factor activity
	biological_process	GO:0006351 - transcription, DNA-templated GO:0045893 - positive regulation of transcription, DNA-templated

Note(s):

Note(s): ...[more].

Evidence:

[AIFS] Automated inference of function from sequence
[APPH] Assay of protein purified to homogeneity
[IEP] Inferred from expression pattern
[IMP] Inferred from mutant phenotype

Reference(s):

[1] Perez-Rueda E., et al., 2004
[2] Shimada T., et al., 2012

External database links:

ECOCYC:

ECOLIWIKI:

INTERPRO:

INTERPRO:

INTERPRO:

MODBASE:

PDB:

PFAM:

PRIDE:

PROSITE:

REFSEQ:

SMR:

UNIPROT:

Operon

Name:

rcdA

Operon arrangement:

Transcription unit	Promoter
ybjK

RNA cis-regulatory element

Attenuation:	Translational

Elements in the selected gene context region unrelated to any object in RegulonDB

	Type	Name	Post Left	Post Right	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References

Reference(s)
[1] Perez-Rueda E., Collado-Vides J., Segovia L., 2004, Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea., Comput Biol Chem 28(5-6):341-50
[2] Shimada T., Katayama Y., Kawakita S., Ogasawara H., Nakano M., Yamamoto K., Ishihama A., 2012, A novel regulator RcdA of the csgD gene encoding the master regulator of biofilm formation in Escherichia coli., Microbiologyopen 1(4):381-94